Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05474 and BPUM_3263

See Amino acid alignment / Visit BSNT_05474 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:06
# Commandline: needle
#    -asequence dna-align/BSNT_05474___rbsR.1.24716.seq
#    -bsequence dna-align/BPUM_3263___rbsR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05474___rbsR-BPUM_3263___rbsR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05474___rbsR-BPUM_3263___rbsR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05474___rbsR
# 2: BPUM_3263___rbsR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1042
# Identity:     694/1042 (66.6%)
# Similarity:   694/1042 (66.6%)
# Gaps:         107/1042 (10.3%)
# Score: 2036.5
# 
#
#=======================================

BSNT_05474___      1 TTGGCTACAATTAAAGATGTCGCCGGAGCGGCGGGCGTTTCAGTTGCGAC     50
                     ||||||||||||||||||||.||...|||.||....||.||.|||||.||
BPUM_3263___r      1 TTGGCTACAATTAAAGATGTTGCAAAAGCTGCACAAGTATCTGTTGCCAC     50

BSNT_05474___     51 GGTTTCCCGCGTCCTGAATGATAACGGCTATGTACACGAAGTAACGCGAA    100
                     .|||||.|||||.|||||.||||..||.|||||.||...||..|||..||
BPUM_3263___r     51 TGTTTCGCGCGTACTGAACGATACTGGATATGTCCATACAGATACGAAAA    100

BSNT_05474___    101 --CGCGTGTCATAGCGGCGATGGCGAAGCTGAACTA-TTACCCGAATGAA    147
                       ||||||.||.|  |||||||..|.|||||||||| ||.||| ||||||
BPUM_3263___r    101 CCCGCGTGACACA--GGCGATGCAGGAGCTGAACTACTTTCCC-AATGAA    147

BSNT_05474___    148 GTTGCCAGATCTCTATATAAAAGAGAATCCCGACTGATCGGACTTTTGCT    197
                     ||.||.|||||.||.|..|||||||||||.||..|.|||||   ||||.|
BPUM_3263___r    148 GTGGCTAGATCCCTTTTCAAAAGAGAATCTCGCTTAATCGG---TTTGAT    194

BSNT_05474___    198 C---CCGGATATCACAAACCCTTTCTTCCCCCAGCTTGCCCGCGGTGCGG    244
                     |   ||.||||||||||||||.|||||.||.||||||||..|.||.|..|
BPUM_3263___r    195 CTTACCTGATATCACAAACCCCTTCTTTCCTCAGCTTGCTAGAGGCGTAG    244

BSNT_05474___    245 AGGATGA-ATTGAACCGGGAAGGCTATCGCCTTATT-TTCGGCAACAGTG    292
                     ||||||| |||.|..| |.||||.|.||| .||||| |||||.|||||||
BPUM_3263___r    245 AGGATGAGATTCATGC-GCAAGGTTTTCG-GTTATTATTCGGTAACAGTG    292

BSNT_05474___    293 ACGAGGAATTGAAAAAAGAACTTGAATACCTTCAAACCTTTAAGCAAAAT    342
                     |.||.||..|..|.||||||.|.|..||..|.|||||.|||||.||||||
BPUM_3263___r    293 ATGAAGATCTAGAGAAAGAATTGGCTTATTTACAAACATTTAAACAAAAT    342

BSNT_05474___    343 CATGTCGCAGGCATTATTGCCGCAACGAAT-TACCCGGATCTCGAGGAAT    391
                     ||.||.|..||..|.||.||.|..||.||| .|||||.||| .||...||
BPUM_3263___r    343 CAAGTGGTCGGTGTCATCGCTGTCACAAATGAACCCGAATC-AGATATAT    391

BSNT_05474___    392 ACA--GCGGCATGAATTATCCCGTTGTTTTTCTGGACAGAAC--ACTGGA    437
                     |||  |..| ||||||| .||.|||||.||..|.||..||||  .||.|.
BPUM_3263___r    392 ACAATGATG-ATGAATT-GCCTGTTGTGTTCTTAGATCGAACCGTCTCGC    439

BSNT_05474___    438 AGGGGCTCCTTCTGTGTC--CAG-TGACGGCTA-TACAGGAGGAAAGTTA    483
                     |  .||.||||||||.||  ||| |    |||| .||.||.||.||..|.
BPUM_3263___r    440 A--TGCACCTTCTGTATCTGCAGAT----GCTACAACTGGCGGGAAAATG    483

BSNT_05474___    484 GCCGCTCAGGCTATCATT---CACGGAAAAAGCCAGCGCATTACGCTCTT    530
                     |||||...||...|.|||   |.|||.|..||.|||   ||.||.||..|
BPUM_3263___r    484 GCCGCAATGGAATTAATTAGGCGCGGTAGCAGGCAG---ATCACACTGCT    530

BSNT_05474___    531 GAGAGGACCCGCTCACCTGCCGACCGCTCAAG--ACCGCTTTAATGGCGC    578
                     ||.||||||.||.|||||.|..||.|  |.||  |.||.||.||.||.||
BPUM_3263___r    531 GAAAGGACCTGCCCACCTTCAAACAG--CGAGGCAGCGATTCAAAGGTGC    578

BSNT_05474___    579 TTTGGA------AATCTTAAAGCAGGCTGAAGTTGAGTTTCAGGTCATTG    622
                     ..|.||      ||.|..|||  ||||    ||.||.||.||.||.||..
BPUM_3263___r    579 ACTCGATGTACTAACCGAAAA--AGGC----GTCGACTTCCATGTGATGT    622

BSNT_05474___    623 AGACCGCTTCATTTTCTATTAAAGATG--CACAATCGATGGCGAAGGAGC    670
                     ..|..|||||.||||||.||.||||.|  |.|||  ||..||.|||  ||
BPUM_3263___r    623 CTAATGCTTCGTTTTCTTTTCAAGAAGCCCGCAA--GAGTGCTAAG--GC    668

BSNT_05474___    671 TGTTTGCC-GCT-TATCCAGCGACAGATGGTGTAATCGCGAGTAATGATA    718
                     |.|||.|| ||| |||||.|..||||||||..|.||.||.||||||||.|
BPUM_3263___r    669 TCTTTTCCAGCTGTATCCTGAAACAGATGGCATCATTGCCAGTAATGACA    718

BSNT_05474___    719 TT----CAAGCCGCTGCCGTTTTACATGAAGCATTGCGGCGCGGAAAAAA    764
                     ||    |||    |.||.||..||||||||||..|.|||..|||||||..
BPUM_3263___r    719 TTGTCGCAA----CAGCAGTCATACATGAAGCCCTTCGGATCGGAAAAGC    764

BSNT_05474___    765 CGTGCCGGAGGACATTCAAATTATCGGCTATGATGACATTCCGCAAAGCG    814
                     |||.||.|||||..|||||||.||.||.|.|||.||.|||||||||||.|
BPUM_3263___r    765 CGTTCCAGAGGATGTTCAAATCATTGGGTTTGACGATATTCCGCAAAGTG    814

BSNT_05474___    815 GACTTCTGTTCCCGCCACTTTCTACAATTAAACAGCCCGCATATGATATG    864
                     ..||.||.|||||..|.||.||.||.||||..|||||.||.|||||.|||
BPUM_3263___r    815 AGCTGCTCTTCCCTTCCCTATCGACGATTAGGCAGCCTGCCTATGAAATG    864

BSNT_05474___    865 GGAAGAGAAGCTGC-CAAACTGCTTTTGGGCATCATCAAA---------A    904
                     ||||.||||||.|| ||    |||.|      |.||.|||         |
BPUM_3263___r    865 GGAAAAGAAGCAGCGCA----GCTGT------TAATGAAAGCGATTCAGA    904

BSNT_05474___    905 AACAGCCGCTGGCAGA--AACGGCAATT---CAAATGCCTGTCACCTATA    949
                     ||||.|||.|   |||  |||  |||||   ||||||||.|||.|.|.||
BPUM_3263___r    905 AACAACCGAT---AGATCAAC--CAATTATCCAAATGCCCGTCTCTTTTA    949

BSNT_05474___    950 TAGGAAGAAAGACGACAAGAAAGGAAGATT-ACGATGCGTAA    990
                     |.|.|.||.||||.||||||||||..|||| ||.|||.    
BPUM_3263___r    950 TTGAACGAGAGACAACAAGAAAGGTGGATTCACAATGA----    987


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