Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05474 and BPUM_3263
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:06
# Commandline: needle
# -asequence pep-align/BSNT_05474___rbsR.1.24716.seq
# -bsequence pep-align/BPUM_3263___rbsR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05474___rbsR-BPUM_3263___rbsR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05474___rbsR-BPUM_3263___rbsR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05474___rbsR
# 2: BPUM_3263___rbsR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 329
# Identity: 220/329 (66.9%)
# Similarity: 267/329 (81.2%)
# Gaps: 1/329 ( 0.3%)
# Score: 1122.0
#
#
#=======================================
BSNT_05474___ 1 MATIKDVAGAAGVSVATVSRVLNDNGYVHEVTRTRVIAAMAKLNYYPNEV 50
||||||||.||.||||||||||||.||||..|:|||..||.:|||:||||
BPUM_3263___r 1 MATIKDVAKAAQVSVATVSRVLNDTGYVHTDTKTRVTQAMQELNYFPNEV 50
BSNT_05474___ 51 ARSLYKRESRLIGLLLPDITNPFFPQLARGAEDELNREGYRLIFGNSDEE 100
||||:|||||||||:|||||||||||||||.|||::.:|:||:||||||:
BPUM_3263___r 51 ARSLFKRESRLIGLILPDITNPFFPQLARGVEDEIHAQGFRLLFGNSDED 100
BSNT_05474___ 101 LKKELEYLQTFKQNHVAGIIAATNYPDLEEYSGMNYPVVFLDRTLEGAPS 150
|:|||.||||||||.|.|:||.||.|:.:.|:....||||||||:..|||
BPUM_3263___r 101 LEKELAYLQTFKQNQVVGVIAVTNEPESDIYNDDELPVVFLDRTVSHAPS 150
BSNT_05474___ 151 VSSDGYTGGKLAAQAIIHGKSQRITLLRGPAHLPTAQDRFNGALEILKQA 200
||:|..||||:||..:|...|::||||:|||||.||:.||.|||::|.:.
BPUM_3263___r 151 VSADATTGGKMAAMELIRRGSRQITLLKGPAHLQTARQRFKGALDVLTEK 200
BSNT_05474___ 201 EVEFQVIETASFSIKDAQSMAKELFAAYPATDGVIASNDIQAAAVLHEAL 250
.|:|.|:..||||.::|:..||.||..||.|||:||||||.|.||:||||
BPUM_3263___r 201 GVDFHVMSNASFSFQEARKSAKALFQLYPETDGIIASNDIVATAVIHEAL 250
BSNT_05474___ 251 RRGKNVPEDIQIIGYDDIPQSGLLFPPLSTIKQPAYDMGREAAKLLLGII 300
|.||.||||:||||:||||||.||||.||||:||||:||:|||:||:..|
BPUM_3263___r 251 RIGKAVPEDVQIIGFDDIPQSELLFPSLSTIRQPAYEMGKEAAQLLMKAI 300
BSNT_05474___ 301 KKQPLAETAIQMPVTYIGRKTTRKEDYDA 329
:|||:.:..|||||::|.|:||||.|..
BPUM_3263___r 301 QKQPIDQPIIQMPVSFIERETTRKVDSQ- 328
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