Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05486 and BPUM_3272
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:07
# Commandline: needle
# -asequence dna-align/BSNT_05486___alsD.1.24716.seq
# -bsequence dna-align/BPUM_3272___alsD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05486___alsD-BPUM_3272___alsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05486___alsD-BPUM_3272___alsD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05486___alsD
# 2: BPUM_3272___alsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 849
# Identity: 525/849 (61.8%)
# Similarity: 525/849 (61.8%)
# Gaps: 159/849 (18.7%)
# Score: 1514.5
#
#
#=======================================
BSNT_05486___ 1 ------------------ATGA--------AACGAGA-AAG-CAACATTC 22
|||| |||||.| ||| ||||||
BPUM_3272___a 1 ATGGGTATGATGCACCCAATGAATCAACAGAACGACACAAGACAACAT-- 48
BSNT_05486___ 23 AAGTGCTCAGACGCGGTCAAAAAGATCAGCCTGTGAGCCAGA--TTTATC 70
|.|||| .|||.||| |.||||
BPUM_3272___a 49 ---------------GACAAA-------------CAGCAAGAAGTCTATC 70
BSNT_05486___ 71 AAGTATCAACAATGACTTCTCTATTAGACGGAGTATATGACGGAGATTTT 120
|||||||.||.|||||.|||.|..|.||.|..||||||||.||||||||.
BPUM_3272___a 71 AAGTATCGACGATGACCTCTTTGCTGGAAGCCGTATATGATGGAGATTTC 120
BSNT_05486___ 121 GAACTGTCAGAGATTCCGAAATATGGAGACTTCGGTATCGGAACCTTTAA 170
...||.|||.|.|||||..|..|.||.||.|||||.||.||.||.||.||
BPUM_3272___a 121 TCCCTTTCACAAATTCCCGAGCACGGTGATTTCGGGATTGGTACATTCAA 170
BSNT_05486___ 171 -CAAGCTT-GACGGAGAGCTGATTGGGTTTGACGGCGAATTTTACCGTCT 218
||| || ||.|||||||||||.||.||||||||||.||||||.||.||
BPUM_3272___a 171 TCAA--TTAGATGGAGAGCTGATCGGCTTTGACGGCGCATTTTATCGACT 218
BSNT_05486___ 219 CCGTTCAGACGGAACCGCGACACCGGT--CCAAAACGGGGATC------G 260
.||.||.||.|||||.||||||||.|| || |||| .
BPUM_3272___a 219 GCGCTCGGATGGAACAGCGACACCAGTTACC--------GATCAAGACTA 260
BSNT_05486___ 261 TTCTCCGTTCTGTTCATTTA-CGTTCTTTACACCGGACATGACG--CACA 307
|||.||.|||||.|| |.|| |.||||||..|.|.||.|| || ||..
BPUM_3272___a 261 TTCGCCTTTCTGCTC-TCTAGCATTCTTTGAAACTGATAT--CGTTCATC 307
BSNT_05486___ 308 AAATTGATGCGAAAATGACACGCGAAGACTTTGAAAAAGAGATCAACAGC 357
.|||||||||....|||||..||.||||..|.|||.||||.|||.||.||
BPUM_3272___a 308 GAATTGATGCAGCCATGACGAGCAAAGAGCTAGAAGAAGAAATCGACCGC 357
BSNT_05486___ 358 ATGCTGCCAAGCAGAAACTTATTTTATGCAATTCGTATTGACGGATTGTT 407
||..|.||.||.|..||..|.||||||||.||.||.|||||.||....||
BPUM_3272___a 358 ATTTTACCGAGTAAGAATGTGTTTTATGCGATCCGCATTGATGGTACATT 407
BSNT_05486___ 408 TAAAAAGGTGCAGACAAGAACGGTAGAACTTCAAGAAAAACCTTACGTGC 457
.||||||||.||.|||.|.|||||.|||...||.||||||||||||||.|
BPUM_3272___a 408 CAAAAAGGTTCAAACACGTACGGTCGAAAAACAGGAAAAACCTTACGTTC 457
BSNT_05486___ 458 CAATGGTTGAAGCGGTCAAAACACAGCCGATTTTCAACTTCGA------- 500
|.|||||.|||||.|||||..|||||||.||.|||.|.|||||
BPUM_3272___a 458 CGATGGTGGAAGCAGTCAAGTCACAGCCCATCTTCGATTTCGAGGATATT 507
BSNT_05486___ 501 CAACGTGAGAGGAACAATCGTAGGTTTCTTGACAC--CAGCTTATGCAAA 548
|| |||||||||||..||||||...|||| ||| ||||||.|
BPUM_3272___a 508 CA-------AGGAACAATCGCCGGTTTCCGTACACCTCAG--TATGCACA 548
BSNT_05486___ 549 CGGAATCGCCGTTTCAGGCTATCACCTGCACTTCATTGACGAAGGACGCA 598
.||.||.||.||....||.|||||.||.||.||||||||.||.|..||.|
BPUM_3272___a 549 TGGTATTGCGGTGAGTGGATATCATCTTCATTTCATTGATGACGATCGAA 598
BSNT_05486___ 599 ATTCAGGCGGACACGTTTTTGACTA---TGTGCTTGA-GGATTG--CACG 642
.|...|||||||||||.|||||.|| || |||| ..|.|| ||
BPUM_3272___a 599 GTGTTGGCGGACACGTATTTGATTACACTG---TTGATCAAGTGACCA-- 643
BSNT_05486___ 643 GTTACG-ATTTCTCAAAA----AATGAACATGAATCT-CAGACTTCCGAA 686
|.|| |||||.||||| .|| ||||||.| || .||.|||||
BPUM_3272___a 644 --TCCGAATTTCACAAAAGCGTCAT----ATGAATTTACA-CCTGCCGAA 686
BSNT_05486___ 687 CACAGC-GGATTTCTTTAATGCGAATCTGGATAACCCTGATTTTGCGA-A 734
||| || |||.||||| |.||.|.| ||..|||| ||| .
BPUM_3272___a 687 CAC-GCAGGAATTCTT-----CCAAGCAG----ACATTGAT----CGAGC 722
BSNT_05486___ 735 AGATATCG------AAA----CAA--CTGAAGGAAGCCC---TGAATAA 768
.||..||| ||| ||| |.|||.|.||||| |.|||||
BPUM_3272___a 723 TGACCTCGCACAGCAAATTGCCAATGCAGAAAGTAGCCCAGATCAATAA 771
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