Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05546 and BPUM_3284

See Amino acid alignment / Visit BSNT_05546 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:10
# Commandline: needle
#    -asequence dna-align/BSNT_05546___ywpF.1.24716.seq
#    -bsequence dna-align/BPUM_3284___ywpF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05546___ywpF-BPUM_3284___ywpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05546___ywpF-BPUM_3284___ywpF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05546___ywpF
# 2: BPUM_3284___ywpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 444
# Identity:     286/444 (64.4%)
# Similarity:   286/444 (64.4%)
# Gaps:          66/444 (14.9%)
# Score: 810.5
# 
#
#=======================================

BSNT_05546___      1 ATGAAAACCTTTAAACTGGTTGACCTGAATGTGGAACGAGTGGA---CAA     47
                     |||||||||||||..|||.||||..|.||..|.||||   |.||   .||
BPUM_3284___y      1 ATGAAAACCTTTAGGCTGATTGATTTAAAAATCGAAC---TTGATCCAAA     47

BSNT_05546___     48 GGAAGA-ACAATCAATCGAACAGTTTCCCCTTATTGACGGACTGATTATA     96
                     |.|||| |.|||  .||.|.||  ||||||||..||||||..|.||.||.
BPUM_3284___y     48 GCAAGATAAAAT--GTCCAGCA--TTCCCCTTCGTGACGGTTTAATCATT     93

BSNT_05546___     97 AATAAAGAAGACGGTGAAAATCACTGGCTGATTGAGGCGCTTGT---ACA    143
                     |||||||||||.||.||||||||||||.||||.|||||.||..|   |.|
BPUM_3284___y     94 AATAAAGAAGATGGAGAAAATCACTGGATGATCGAGGCACTCATCCCAAA    143

BSNT_05546___    144 GAAAGA---ACATCTGTCTTTTTTTGAACAGCT-TCTAAACAGC-CAATC    188
                     ||||.|   |||..||      |||||...||| |.|.|.|||| ||  |
BPUM_3284___y    144 GAAACATAGACAGGTG------TTTGAGGTGCTCTTTCAGCAGCACA--C    185

BSNT_05546___    189 TGAAGCCAAAGTATTTGTAACGATCACGAAAAAAAGCAATCGCCCCGCCC    238
                     |||||..||..|..|.|||||||||||||||.|||.|||.|||||.|..|
BPUM_3284___y    186 TGAAGTGAAGATTCTAGTAACGATCACGAAAGAAAACAACCGCCCTGTTC    235

BSNT_05546___    239 AGCTGACAG--CAGCAGTGAAAAATATCGTCAAGC--TGGAAGAAAGCAT    284
                     |.||..|.|  ||  |||.|||||.||.||  .||  |.|||||||.|||
BPUM_3284___y    236 ATCTATCTGTCCA--AGTCAAAAACATTGT--TGCTTTAGAAGAAAACAT    281

BSNT_05546___    285 CCAGGTTTTACTCTATGG----------ACAAATGGTCACA----AGAAA    320
                     ....||..|.|||.||||          ||||||.|..|||    |||||
BPUM_3284___y    282 TTCTGTGCTGCTCGATGGTAAGATGATTACAAATCGCTACAGAACAGAAA    331

BSNT_05546___    321 AC--AGCAGGGCACTGAAACCATTCTCGAGTCCCTTGTAAAAGA-GGGCT    367
                     .|  ||.|  |.|||.|||        ||   |||.||.||||| |||||
BPUM_3284___y    332 CCGAAGAA--GTACTTAAA--------GA---CCTCGTCAAAGAGGGGCT    368

BSNT_05546___    368 ATACAGGAACAAAACTCATTGAAGCATTTAAGCAAAAGTTATAA    411
                      |.|.|||..||||||..|.||.||||||||.|||||...||||
BPUM_3284___y    369 -TTCCGGAGAAAAACTACTAGATGCATTTAAACAAAACACATAA    411


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