Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05555 and BPUM_3287

See Amino acid alignment / Visit BSNT_05555 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:10
# Commandline: needle
#    -asequence dna-align/BSNT_05555___rapD.1.24716.seq
#    -bsequence dna-align/BPUM_3287___rapD1.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05555___rapD-BPUM_3287___rapD1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05555___rapD-BPUM_3287___rapD1.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05555___rapD
# 2: BPUM_3287___rapD1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1247
# Identity:     657/1247 (52.7%)
# Similarity:   657/1247 (52.7%)
# Gaps:         373/1247 (29.9%)
# Score: 1462.5
# 
#
#=======================================

BSNT_05555___      1 ATGATTTCGAAGTTTAT---TGAAAAAAGAATGCTAAACATGTT----AG     43
                        ||   |||.|||||   |||.|||...||  ||||.|..||    |.
BPUM_3287___r      1 ---AT---GAATTTTATAAGTGATAAATCCAT--TAAAAAACTTCTCCAT     42

BSNT_05555___     44 ACGAGTGGTATTCCGCAATGAGCAAACGCAAAATGAATC-ACGTTT---G     89
                     .|  |||||||.|           ||.||.||| |.||| ||.|||   |
BPUM_3287___r     43 TC--GTGGTATAC-----------AATGCTAAA-GCATCGACATTTTTCG     78

BSNT_05555___     90 CACACTGAAAGAGAAA-------------ATT-GACCAGCACCTTCCAAA    125
                     .|..||||   |||||             ||| .|.||.||.|.| .|||
BPUM_3287___r     79 AAGGCTGA---AGAAATCAAAACAACTCTATTAAAACATCAACGT-AAAA    124

BSNT_05555___    126 GATCAAAAAGAACACAAAACTTTGGATGCGTTATCAATTG------TTTC    169
                     .|||||||| |||| ..||||.||..|.|.||||||..||      ||| 
BPUM_3287___r    125 TATCAAAAA-AACA-GGAACTCTGTTTACATTATCAGCTGATGCTTTTT-    171

BSNT_05555___    170 AGGCCCGCCATCAGCTGCTTTTTGAA--AACCAGAACGGACT--------    209
                          |||||||||||| |...||||  ||.|||||  ||||        
BPUM_3287___r    172 -----CGCCATCAGCTG-TGGATGAATCAAACAGAA--GACTTAGAAAAA    213

BSNT_05555___    210 -CGATTCATTGTTCGA--TGACCTATATGGCCTGGAAGACAAAATGGATG    256
                      .||..|||     ||  |||           ||.|..|||||..|||| 
BPUM_3287___r    214 ATGAAACAT-----GAATTGA-----------TGCAGCACAAAGAGGAT-    246

BSNT_05555___    257 ATGAATTGAA--------ATATTATCTGTA-TTTTTTCTCTGGGTTATAT    297
                     ||||| .|||        .|||||..|.|| ||.||||||.|..||   |
BPUM_3287___r    247 ATGAA-CGAAGAACTAGCCTATTACTTTTACTTCTTTCTCGGACTT---T    292

BSNT_05555___    298 GAGATGGTAAAAACAGC--TCCGAAACATGCAGTACATC----ATTTTAA    341
                     ..||.|.|..|||||||  ||..||..|||||    |||    ||.|..|
BPUM_3287___r    293 ACGAAGCTTTAAACAGCGATCAAAATGATGCA----ATCTACTATCTCGA    338

BSNT_05555___    342 AAAAGCTGAACAGTACCTGGCCGCCATTC----AAAATACGTTTGAAGCC    387
                     |||.||.||  ||.||  |.|.|.|||||    |..||..|.|.||.|..
BPUM_3287___r    339 AAAGGCAGA--AGAAC--GACTGTCATTCCTTAACGATGAGCTGGAGGAA    384

BSNT_05555___    388 GCTGATTTATATTATCAAACCGCCGGCGCCTATTACTTGATGA-AATCAC    436
                     ||.||.||..|||..|..||....||.|..||||     ||.| ||||.|
BPUM_3287___r    385 GCAGAGTTCCATTTCCGTACAAGTGGTGTTTATT-----ATAACAATCGC    429

BSNT_05555___    437 ----CGCCGCTTTCCATCCAATACGTCA-----AAAAAGCATTACACATC    477
                         |||.|||.|     |.||.|||||     |||||||..|..|.|||
BPUM_3287___r    430 TATTCGCTGCTAT-----CGATTCGTCATATTCAAAAAGCGATGGATATC    474

BSNT_05555___    478 TATTTGC--------------ACCAATTCGGCTATATCAAAAAGGTAATC    513
                       |||||              ||||  |.|.||.||||      ||    
BPUM_3287___r    475 --TTTGCAAAGCATGGGGATGACCA--TAGCCTCTATC------GT----    510

BSNT_05555___    514 ACCTGTAAGCTTTTGCTCGCCGTGAATTATATTGATCAAGAACGCTATGA    563
                        |||||..||.||||||.|.|.|||||||..||||||.||...|||||
BPUM_3287___r    511 ---TGTAAAATTGTGCTCGGCCTTAATTATAGCGATCAAAAAAAATATGA    557

BSNT_05555___    564 AAAAGCTGAACAGCTTTTCAAAGAAATCATTAAGAAAACCCAGCAACTAC    613
                     |.||||.|||...|||||.|..||.|||||             |.|||||
BPUM_3287___r    558 AGAAGCCGAAGCTCTTTTTATCGAGATCAT-------------CGACTAC    594

BSNT_05555___    614 -------------ATGACGAAAACCTGC----TATGCCACGCTTATTATA    646
                                  ||||..||.|.||||    |||    ||.|||||||.
BPUM_3287___r    595 GTGAAAATGATTGATGATCAAGAACTGCTCGGTAT----CGTTTATTATG    640

BSNT_05555___    647 ACCTTGGCTTTTTAAAAGCGACCGAGAAAAAAGAC-CA-GGAAGCGCTTC    694
                     |...|||.|||.|..|..|||  ||.||||..||| || |.|||||||..
BPUM_3287___r    641 ATGCTGGTTTTATTCAGTCGA--GACAAAATCGACACACGAAAGCGCTGG    688

BSNT_05555___    695 TTTACTTTAGAAAAGTATTAAAGAAT------CAAGAATTTGAAATGAAT    738
                     ..|||||||.|||||.|.|      |      |.||.||           
BPUM_3287___r    689 AATACTTTAAAAAAGCACT------TCGTCTCCCAGCAT-----------    721

BSNT_05555___    739 TCACC---AGT-------CTCATATCTTCATTGTG--TGTACGAGTCTGT    776
                       |||   |||       |||.|||.|  ||.|||  |.||.||..||||
BPUM_3287___r    722 --ACCGGAAGTCCGTACACTCCTATGT--ATCGTGCCTCTATGAAACTGT    767

BSNT_05555___    777 CAGAGCGCT----TTTTAA---------AAC-----AGGGAACATCACAG    808
                         |||.|    ||.|||         |||     |.||||      .|
BPUM_3287___r    768 ----GCGTTCCTGTTATAAAGAAAATTTAACCGATGAAGGAA------TG    807

BSNT_05555___    809 AAGCTAAAGCCGTCCTTCAAAAAGG---AAAAG---------------AA    840
                     ||| ||.|       ||||||||||   |||||               ||
BPUM_3287___r    808 AAG-TATA-------TTCAAAAAGGATTAAAAGAGGCCGTTGCTTCTCAA    849

BSNT_05555___    841 T----TATCTGAA-----AAGGTAGACATTCAAACCATTTATTTAAAATT    881
                     |    |||.|.||     |||      .||||||.|  ||||||      
BPUM_3287___r    850 TTTGATATATTAAGAATCAAG------TTTCAAATC--TTATTT------    885

BSNT_05555___    882 AAAAACGCTTGAAGCCCTCTAC------ACCTCAGTGGAAGATCCCTATG    925
                            |||      ||||||      ||.|||..||.||      |||
BPUM_3287___r    886 -------CTT------CTCTACAGCCAAACGTCAAAGGCAG------ATG    916

BSNT_05555___    926 AGCAGCT------GCTCG-AATATGTGCTTGAATTAGAAAAAATCGAGGC    968
                     |||||.|      |||.| .|.||| .||||||  .|||||    ||.||
BPUM_3287___r    917 AGCAGATCGCAAGGCTTGTTACATG-CCTTGAA--CGAAAA----GAAGC    959

BSNT_05555___    969 GTGGGTGGATTTAGAAGTGCTGTTAGAAGATATTACGGAATACTACAAAA   1018
                     ||||.|.|||.|.||.|...||.|.|..|||.|..|.||.|..|||||||
BPUM_3287___r    960 GTGGATTGATCTTGAGGATTTGCTTGCCGATGTCTCAGATTTTTACAAAA   1009

BSNT_05555___   1019 AAAAGGACGATTTCGAAAAAGCCGCTTTTTTTATCATGCGCGGCTGA   1065
                     ||||||.|||.||.||...||||||.||||||||||||.|.||||||
BPUM_3287___r   1010 AAAAGGGCGACTTTGAGCGAGCCGCCTTTTTTATCATGAGAGGCTGA   1056


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