Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05614 and BPUM_3320

See Amino acid alignment / Visit BSNT_05614 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:12
# Commandline: needle
#    -asequence dna-align/BSNT_05614___spoIID.1.24716.seq
#    -bsequence dna-align/BPUM_3320___spoIID.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05614___spoIID-BPUM_3320___spoIID.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05614___spoIID-BPUM_3320___spoIID.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05614___spoIID
# 2: BPUM_3320___spoIID
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1101
# Identity:     720/1101 (65.4%)
# Similarity:   720/1101 (65.4%)
# Gaps:         144/1101 (13.1%)
# Score: 2152.5
# 
#
#=======================================

BSNT_05614___      1 ATGAAA-CAAT----TCG-CAATCACACTATCCGTACTATGTGCAT--TG     42
                     |||||| ||||    |.| |||||.||..|        ||.|||||  |.
BPUM_3320___s      1 ATGAAACCAATGATATGGACAATCGCAGGA--------ATATGCATCATT     42

BSNT_05614___     43 ATTCTCTTGGTTCCCACACT-CTTG-GTT--ATACCATTCCAGCATAATA     88
                     |||.|..||.||||.||..| |||| |||  ..||..|||         |
BPUM_3320___s     43 ATTTTAATGATTCCAACTTTACTTGTGTTGCCGACGTTTC---------A     83

BSNT_05614___     89 AGG--AAGCGGGGGC----CAGCGTAGAATCAGAAAAGACAGCAGTCAGC    132
                     |||  ||.|.|.|||    ||||.| |.|||||...||.||.|||     
BPUM_3320___s     84 AGGGAAACCAGAGGCAAGTCAGCAT-GTATCAGCGGAGCCATCAG-----    127

BSNT_05614___    133 ACGAAACCAGCATCGAAAGGAGCAGAAACATTGAAAGC-ATCACCTGTTT    181
                      |.|||..||.|..|||.||..|||..|.|||| |||| ||||||.|||.
BPUM_3320___s    128 -CTAAAAAAGAAGTGAAGGGTACAGTCAAATTG-AAGCAATCACCCGTTG    175

BSNT_05614___    182 CTATTCCCGTCTATCGAACCGCAAATCAATCCGTAGAAAACATTCCGCTT    231
                     ||||.|||||||||||..|.||..||||....|||||||||||||| |||
BPUM_3320___s    176 CTATCCCCGTCTATCGTTCAGCTCATCAGCAGGTAGAAAACATTCC-CTT    224

BSNT_05614___    232 -GAAGAGTATGTGATTGGAGTCGTCGCCTCCGAAATGCCGGCAACCTTTA    280
                      ||||||||||||||.||.|||||.||.||.||||||||.||....|||.
BPUM_3320___s    225 AGAAGAGTATGTGATCGGTGTCGTAGCGTCTGAAATGCCAGCTGATTTTG    274

BSNT_05614___    281 AACCTGAAGCACTGAAAGCCCAGGCGCTTGCCGCCAGAACATTTATTGTC    330
                     |....||||||||.||.||.|||||.||.||.||.|||||.|.|||.|||
BPUM_3320___s    275 AGATGGAAGCACTCAAGGCACAGGCTCTCGCTGCAAGAACGTATATCGTC    324

BSNT_05614___    331 AGACTGATGGT-------------GTCAAATTCAGCGGTAGAAGCTCCTA    367
                     ||||..|||.|             |||||||             |.||.|
BPUM_3320___s    325 AGACAAATGATCATCGATAAGACCGTCAAAT-------------CACCAA    361

BSNT_05614___    368 AAGGCTCACTGGTGGATGATACACAGATGTTCCAGGTGTATAAAAGCAAA    417
                     |.|||||.||.||.||||||||.||.||||||||.||||||||||.| ||
BPUM_3320___s    362 AGGGCTCTCTTGTAGATGATACCCAAATGTTCCAAGTGTATAAAAAC-AA    410

BSNT_05614___    418 GC-GGAGCTGAAAAAACAGTGGGGCACAAGCTATGAGACA-----AAACT    461
                     || |||.||.||.|||...|||||.| ||||    |.|||     |||.|
BPUM_3320___s    411 GCAGGAACTCAAGAAAATTTGGGGGA-AAGC----ATACAATTGGAAATT    455

BSNT_05614___    462 GAAGAAAATCACAGATGCGGTAACCAGTACGCAAGGCAAAAT-----CTT    506
                     |||.|||.|.|||||.||.||..|.||.||.|||||.|||.|     |||
BPUM_3320___s    456 GAAAAAAGTTACAGAAGCTGTCGCTAGCACACAAGGAAAAGTGCTCACTT    505

BSNT_05614___    507 A--ACGTACAACAACCAGCCGATTGAAGCATCCTTTTTCTCCACAAGCAA    554
                     |  |||   ||.|||||    |||||.||.||.||.||.||.|||||.||
BPUM_3320___s    506 ATGACG---AAAAACCA----ATTGATGCCTCATTCTTTTCAACAAGTAA    548

BSNT_05614___    555 CGGCTACACAGAGAATGCAGAAGCTTATTGGACAAGTGCTATCCCATATT    604
                     |||..|.||.||.|||||.|||||||||||||.||.||..||||||||||
BPUM_3320___s    549 CGGTAAAACGGAAAATGCCGAAGCTTATTGGAAAAATGAAATCCCATATT    598

BSNT_05614___    605 TAAAAAGCGTCAAAAGCCCATGGGATAAAAAGTCTCCGAAATAT-AAGGC    653
                     |.|||||.|||.||||...||||||..||||.||.||.||||.| ||..|
BPUM_3320___s    599 TGAAAAGTGTCGAAAGTAAATGGGACGAAAAATCGCCAAAATTTCAAAAC    648

BSNT_05614___    654 AACGAAAACCTTTACAGCGGCAGAATTTCAGCAAAAGCTTGGCGTCAAGC    703
                     || |||||||.|..|||.....||||||||||||||..|.||.||.|.||
BPUM_3320___s    649 AA-GAAAACCATCCCAGTTAGTGAATTTCAGCAAAAATTAGGTGTGACGC    697

BSNT_05614___    704 TGGATGGATCTA--------GCGCA-GTAGGGAAGAT--TACCGGCGA--    740
                     |         ||        ||.|| |||||..||||  ||     ||  
BPUM_3320___s    698 T---------TACTCAACAGGCTCAGGTAGGACAGATAGTA-----GAAC    733

BSNT_05614___    741 -GACACCGGGCCACCAGGTCGCAACTGCCGTCATTAACGGCAAGACGCTG    789
                      ||||||.||..|.||.||.||.|..|.||||||.|||||.||.||.|||
BPUM_3320___s    734 GGACACCAGGAAATCAAGTAGCTAAAGTCGTCATAAACGGTAAAACACTG    783

BSNT_05614___    790 AAAGGAAGAGACATACGTGAAAAGCTGGGTCTCAACTCCGCCGATTTTGA    839
                     |.|||.||||||||.|||||.....|.||.||..|.||.||.||.|||..
BPUM_3320___s    784 ACAGGCAGAGACATTCGTGAGTCATTAGGGCTTCATTCAGCAGACTTTAC    833

BSNT_05614___    840 ATGGAAGCGAAATGG--AGACACAATTA--CAGTCACGACGAGAGGATTT    885
                     ||||.|.|||.|.||  ||   |||.||  || |.|||||.|.|||.|.|
BPUM_3320___s    834 ATGGGAACGACAGGGCCAG---CAAATAATCA-TTACGACAAAAGGGTAT    879

BSNT_05614___    886 GGCCACGGTGTGGGGATGAGCCAATACGGAGCGAATTTTATGGCCAAAG-    934
                     |||||.|||||.||.|||||.||.||.||.|||.|||.||||| ||.|| 
BPUM_3320___s    880 GGCCATGGTGTTGGAATGAGTCAGTATGGTGCGCATTATATGG-CACAGT    928

BSNT_05614___    935 AAGGCAAAACGGTTGATGACATTGTAAAGTACTATTACCAAGGCACACAA    984
                     .|||.||||..||.||||..||.||.||..|.|||||..||||.|..|||
BPUM_3320___s    929 CAGGAAAAAAAGTGGATGCTATCGTGAAACATTATTATAAAGGGATTCAA    978

BSNT_05614___    985 ATTTCTGAGGCAGATG--CGTTTT-TGAATAAATATATGGCGAAAAAGTA   1031
                     ||   |||..|||.||  |||||| |.||.|..||||||||||||||.||
BPUM_3320___s    979 AT---TGAATCAGCTGATCGTTTTCTTAACACGTATATGGCGAAAAAATA   1025

BSNT_05614___   1032 G   1032
                     .
BPUM_3320___s   1026 A   1026


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.