Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05638 and BPUM_3336

See Amino acid alignment / Visit BSNT_05638 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:14
# Commandline: needle
#    -asequence dna-align/BSNT_05638___ywlG.1.24716.seq
#    -bsequence dna-align/BPUM_3336___ywlG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05638___ywlG-BPUM_3336___ywlG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05638___ywlG-BPUM_3336___ywlG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05638___ywlG
# 2: BPUM_3336___ywlG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 604
# Identity:     362/604 (59.9%)
# Similarity:   362/604 (59.9%)
# Gaps:         125/604 (20.7%)
# Score: 1005.5
# 
#
#=======================================

BSNT_05638___      1 ATGAA---TGAGTTGAAACAA-----ACGTGGAAGACGATGCTGTCT---     39
                     |||||   || ||     |||     .|.|||||        ||| |   
BPUM_3336___y      1 ATGAACATTG-GT-----CAAGATTGGCTTGGAA--------TGT-TAAA     35

BSNT_05638___     40 -GAGTTTCA------GGACCAA--GCGGAATTGAAACAAGATCAGCTCTT     80
                      ||||||||      ||.|.||  |||...|.|..|||        ||||
BPUM_3336___y     36 AGAGTTTCATCAAATGGTCGAACTGCGTGCTGGGCACA--------TCTT     77

BSNT_05638___     81 CGTCCTTGGATGCAGCACGAGC-GAAGTGGCCGGCAGCCGG-----ATCG    124
                     .||..|.||||||||.|| |.| ||||||||.||     ||     ||.|
BPUM_3336___y     78 AGTGATCGGATGCAGTAC-ATCAGAAGTGGCTGG-----GGAGCATATTG    121

BSNT_05638___    125 GCACATCGGGCAGTGTAG-ATATCGCTGAAAGCATCTA-CAGCGGACTTG    172
                     |.|||.|.||.|||| || |.|||||||.....||||| ||  .||.|| 
BPUM_3336___y    122 GGACAGCAGGAAGTG-AGCAAATCGCTGTGTCTATCTATCA--AGAATT-    167

BSNT_05638___    173 CTGAGCTCCGGGA-----AAAAACGGGAATCCATCTGGCGTTTCAATGCT    217
                        ||.||.|..|     |.||||.||.||..|.|||||.||.||.||||
BPUM_3336___y    168 ---AGATCAGTTAAGACGAGAAACTGGCATTGAGCTGGCTTTCCAGTGCT    214

BSNT_05638___    218 GCGAGCATTTAAACAGAGCGCTTGTCGTCGAAGCAGAAACAGCCAAGCTG    267
                     |.||||||.|.||..|.||.|||||.||.||||.||||...||      .
BPUM_3336___y    215 GTGAGCATCTGAATCGTGCTCTTGTTGTGGAAGAAGAAGTGGC------T    258

BSNT_05638___    268 TTCAGGCTTCCAACC----GTTTCT----GCCGTGCCCGTTCCAAAAGCG    309
                     |||.|||||  ||||    |.||.|    ||.||.||.||.|.|||.|||
BPUM_3336___y    259 TTCCGGCTT--AACCTAGAGATTGTGGAGGCAGTACCTGTCCGAAAGGCG    306

BSNT_05638___    310 GGCGGAGCGATGGCGTCTTATGCGTTTAAGCAGATGAAGTCTCCTGTTCT    359
                     ||.||..||||||||.||.||||||.|.||||.|||.|...||||||..|
BPUM_3336___y    307 GGTGGTTCGATGGCGGCTCATGCGTATCAGCACATGGAACATCCTGTGTT    356

BSNT_05638___    360 TGTTGAAACCATTCAGGCTGACGCCGGAATTGATATAGGCGATACGTTTA    409
                     .||||||.||||..||||..|.||.|||||||||||.||.|||||.||.|
BPUM_3336___y    357 AGTTGAATCCATCGAGGCGCATGCTGGAATTGATATTGGTGATACATTCA    406

BSNT_05638___    410 TCGGCATGCATCTGAAGCCGGTGGCTGTCCCTGTGCGTGTCTCTCAAAAC    459
                     |.||.||||||||.|||...||.|||||.|||||.|              
BPUM_3336___y    407 TTGGGATGCATCTAAAGAGAGTCGCTGTACCTGTTC--------------    442

BSNT_05638___    460 AGCCTCGGT-----TCA----------GCTCATGTGACATTGGCGCGTAC    494
                      |||||.||     |||          ||.|||||||||||.|||...||
BPUM_3336___y    443 -GCCTCAGTCGCCATCAATTAGGGCATGCACATGTGACATTTGCGAAAAC    491

BSNT_05638___    495 ACGGCCGAAACTAATCGGCGGAGTGCGGGCGGTTTAT--GAGTGTGAATG    542
                     .||.|||||.||.||.|||||||..||.|||||||||  .||     ||.
BPUM_3336___y    492 GCGTCCGAAGCTGATTGGCGGAGAACGAGCGGTTTATACAAG-----ATC    536

BSNT_05638___    543 A---    543
                     |   
BPUM_3336___y    537 ATAG    540


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