Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05670 and BPUM_3356

See Amino acid alignment / Visit BSNT_05670 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:16
# Commandline: needle
#    -asequence dna-align/BSNT_05670___ywjH.1.24716.seq
#    -bsequence dna-align/BPUM_3356___ywjH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05670___ywjH-BPUM_3356___ywjH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05670___ywjH-BPUM_3356___ywjH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05670___ywjH
# 2: BPUM_3356___ywjH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 642
# Identity:     498/642 (77.6%)
# Similarity:   498/642 (77.6%)
# Gaps:           6/642 ( 0.9%)
# Score: 1897.0
# 
#
#=======================================

BSNT_05670___      1 ATGTTATTCTTTGTTGATACAGCCAATATCGATGAAATTAGAGAAGCGAA     50
                     ||||||||.||.||.||||||||.|||||||..||.||.|.|||.|||.|
BPUM_3356___y      1 ATGTTATTTTTCGTAGATACAGCGAATATCGCAGACATCAAAGAGGCGCA     50

BSNT_05670___     51 TGAATTAGGAATTCTCGCCGGTGTAACGACGAATCCTAGTTTAGTAGCAA    100
                     .||..|.||.|||.|.||.||.||.||.||.||.||||||||||||||.|
BPUM_3356___y     51 CGAGCTTGGCATTTTAGCAGGCGTCACAACAAACCCTAGTTTAGTAGCGA    100

BSNT_05670___    101 AGGAAGCTAACGTATCATTCCACGACCGTCTTCGCGAGATCACAGACGTC    150
                     |.|||....|||||||||||||.||||||||||||||.|||||.|||||.
BPUM_3356___y    101 AAGAAAAGGACGTATCATTCCATGACCGTCTTCGCGAAATCACTGACGTG    150

BSNT_05670___    151 GTGAAAGGGTCTGTAAGCGCAGAGGTTATTTCTTTGAAAGCTGAGGAAAT    200
                     ||...|||.|||||.||.|||||.||||||||..|.|||||.||.|||||
BPUM_3356___y    151 GTATCAGGTTCTGTCAGTGCAGAAGTTATTTCCCTCAAAGCAGAAGAAAT    200

BSNT_05670___    201 GATCGAGGAAGGAAAAGAACTGGCGAAGATCGCTCCGAACATTACGGTGA    250
                     |||.||.|||||||||||.||.||....||.||.||.||.||.|||||||
BPUM_3356___y    201 GATTGAAGAAGGAAAAGAGCTTGCTGCCATTGCACCAAATATCACGGTGA    250

BSNT_05670___    251 AAATCCCAATGACGTCTGACGGTTTAAAAGCGGTAAGAGCACTTACTGAC    300
                     |||||||||||||..|.||.|||.|.|||||.||.|.|||..|.||.|||
BPUM_3356___y    251 AAATCCCAATGACAACAGATGGTCTTAAAGCTGTCAAAGCGTTAACAGAC    300

BSNT_05670___    301 TTAGGCATCAAAACAAACGTTACATTGATCTTCAATGCCAACCAGGCGCT    350
                     .|.||.||.||||||||.||.||.|||||.||.|.|||.|||||.||..|
BPUM_3356___y    301 CTTGGAATTAAAACAAATGTCACTTTGATTTTTAGTGCAAACCAAGCATT    350

BSNT_05670___    351 TCTTGCTGCCAGAGCGGGGGCAACATATGTATCTCCATTCCTGGGACGTT    400
                     .|||||.||.|||||.||.||.||.|||||.|||||||||||.||.||.|
BPUM_3356___y    351 GCTTGCAGCTAGAGCTGGTGCGACGTATGTCTCTCCATTCCTCGGCCGCT    400

BSNT_05670___    401 TAGATGACATCGGCCACAACGGGCTTGACCTGATTTCA--GAAGTTAAAC    448
                     ||||||||||.|||||.||.||.||.||.||.|  |||  |||||.|||.
BPUM_3356___y    401 TAGATGACATTGGCCAAAATGGTCTCGATCTCA--TCAGTGAAGTGAAAA    448

BSNT_05670___    449 AGATTTTTGATATTCACGGCCTTGACACACAAATCATTGCAGCGTCCATC    498
                     ..|||||||||.||||.||..|.||.||||||||||||||.||.|||||.
BPUM_3356___y    449 CCATTTTTGATGTTCATGGTTTAGATACACAAATCATTGCTGCATCCATT    498

BSNT_05670___    499 CGCCACCCGCAGCACGTGACAGAAGCCGCTCTTAGAGGGGCTCATATCGG    548
                     ||.||.||||||||||||||||||||.||.||||||||.|||||||||||
BPUM_3356___y    499 CGTCATCCGCAGCACGTGACAGAAGCTGCGCTTAGAGGTGCTCATATCGG    548

BSNT_05670___    549 CACAATGCCGCTGAAAGTCATTCATGC-GCTCACTAAACACCCGTTAACA    597
                     |||||||||||||||||||| |||.|| |||.||.||||||||.|||||.
BPUM_3356___y    549 CACAATGCCGCTGAAAGTCA-TCAAGCAGCTGACGAAACACCCATTAACG    597

BSNT_05670___    598 GACAAAGGAATCGAACAATTCCTGGCAGACTGGAACAAATAA    639
                     ||....||.||.||.|||||..|.|||||||||||.||||||
BPUM_3356___y    598 GATGCGGGCATTGAGCAATTTTTAGCAGACTGGAATAAATAA    639


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