Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05681 and BPUM_3374
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:17
# Commandline: needle
# -asequence dna-align/BSNT_05681___ywjF.1.24716.seq
# -bsequence dna-align/BPUM_3374___ywjF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05681___ywjF-BPUM_3374___ywjF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05681___ywjF-BPUM_3374___ywjF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05681___ywjF
# 2: BPUM_3374___ywjF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2216
# Identity: 1554/2216 (70.1%)
# Similarity: 1554/2216 (70.1%)
# Gaps: 202/2216 ( 9.1%)
# Score: 5253.0
#
#
#=======================================
BSNT_05681___ 1 ATGAGCGGCTTTCTCATCGCAAAT--ACATTATT--ATTTCTGATTGTAA 46
||||...||.||.|.||| || ||||.||| ||||..|...||.|
BPUM_3374___y 1 ATGAATAGCCTTTTAATC----ATGAACATGATTGCATTTGCGGCGGTGA 46
BSNT_05681___ 47 CCGCTTACGCTGTCTATTTGTTTGTGTAT----TTGGTCAAAACGAG-AC 91
|||||||||||||.|||||||||.|.||| ||.| ||.||||| |
BPUM_3374___y 47 CCGCTTACGCTGTGTATTTGTTTATTTATCTCATTCG--AACACGAGCA- 93
BSNT_05681___ 92 TGGCCTACATCAAGCTCGGCCAGAAAGAACAATTTGATCAACGGTTCAAG 141
||.|||||....||.|||.|.||||||.|.|| |||| ||||
BPUM_3374___y 94 --GCGTACATTCGTCTTGGCAAAAAAGAAGAGTT---TCAA-----CAAG 133
BSNT_05681___ 142 ----GAA----CGGCTTCACGACA-----TATGGGTGAATGTATTCGGAC 178
||| | |||| |.| |.|||||.||||||||.||.|
BPUM_3374___y 134 ACATGAAAAAGC-GCTT----AGAGCGTGTTTGGGTCAATGTATTTGGGC 178
BSNT_05681___ 179 AGAAAAAACTGCTCAAGGACAAGAAAAGCGGAATCATTCACGTCATGTTT 228
|.||.||.|||.|.|||||||||||.|||||.||||||||.||..|||||
BPUM_3374___y 179 AAAAGAAGCTGTTAAAGGACAAGAAGAGCGGCATCATTCATGTGCTGTTT 228
BSNT_05681___ 229 TTCTACGGATTTATATTGGTTCAGTTCGGAGCAATTGACTTTATCATTAA 278
||||||||||||||..|.||.|||||||||||..||||.|||||.||.||
BPUM_3374___y 229 TTCTACGGATTTATCCTTGTGCAGTTCGGAGCCCTTGATTTTATTATGAA 278
BSNT_05681___ 279 AGGACTGGCTCCCG---GCCGGAATCTGCCGCTTGGCCCGGTCTATCCCG 325
.|||||.|.|||.| | |||| ||.||..|.||.|||.|.||....|
BPUM_3374___y 279 GGGACTCGTTCCAGATAG-CGGA--CTCCCTTTAGGTCCGCTTTACGGTG 325
BSNT_05681___ 326 CCTTCACCTTTTTTCAGGAAATTGTTACGTTTCTCATTTTAATTGCTGTT 375
.|||.||.|||||.||.||..|.||.||..|||||||||||.|.||.|||
BPUM_3374___y 326 TCTTTACTTTTTTCCAAGAGGTGGTCACACTTCTCATTTTAGTAGCCGTT 375
BSNT_05681___ 376 GGGTGGGCATTCTACAGACGTTACATCGAAAAGCTCGTGAGGCTGAAACG 425
|..|||||.|||.|.|||.|.||..|.||||||||.||..|..|.||.||
BPUM_3374___y 376 GTTTGGGCGTTCCATAGAAGGTATGTAGAAAAGCTTGTCCGTTTAAAGCG 425
BSNT_05681___ 426 CGGTTTCAAAGCCGGACTCGTTCTCATTTTTATCGGAGGTTTAATGCTGA 475
.||.||.|||.||||.||.||.||..|.|||||.||.||.||.|||||||
BPUM_3374___y 426 TGGCTTTAAATCCGGTCTAGTGCTTTTATTTATTGGCGGCTTGATGCTGA 475
BSNT_05681___ 476 CCGTTCTGCTTGGGAACGGGATGAATCTGATTTGGCATGAGCATGGGCTT 525
|||||.|.|||||.||||||||||||.|.||.|||||||..|| ||.
BPUM_3374___y 476 CCGTTTTACTTGGCAACGGGATGAATATCATCTGGCATGGACA----CTC 521
BSNT_05681___ 526 TCTTGGAGC----GAGCCAATTGCCTCAGGTATTGCGTTTATGCTTAGCG 571
|||...|.| ||||||||.||.||..|||||||.||..||||..|||
BPUM_3374___y 522 TCTATCACCAACTGAGCCAATCGCATCCAGTATTGCATTCTTGCTGGGCG 571
BSNT_05681___ 572 G--AGTCGGGAAAACAG-GTGCGG---CGGTGATTTTCTATATCGCATGG 615
| ..||| |.| .||||| ||||..||||.|||.||||||||
BPUM_3374___y 572 GTATTTCG------CCGCTTGCGGCAACGGTTGTTTTTTATGTCGCATGG 615
BSNT_05681___ 616 TGGATCCATCTTCTGTTCTTGCTTAGCTTTTTAGTGTACGTGCCTCAGTC 665
|||.|.|||||||||.|.|||||.|..||.||||||||.||.||.|||||
BPUM_3374___y 616 TGGGTGCATCTTCTGATTTTGCTGACATTCTTAGTGTATGTCCCGCAGTC 665
BSNT_05681___ 666 TAAGCATGCCCATTTAATCGCCGGCCCGGCAAACGTCTTTTTCAATAGAA 715
.||||||||.||..|.||.||.||.||||..|||||.|||...|..|||.
BPUM_3374___y 666 AAAGCATGCTCACCTTATTGCAGGACCGGTGAACGTATTTGCGAGCAGAT 715
BSNT_05681___ 716 TGGAATCTGCC-GGAAAACTTGAAAAAATTGATTTTACCGACGAAACGAA 764
|.| |.|.||| ||.||.||..||||||||||||||...|||||.||..|
BPUM_3374___y 716 TAG-ACCCGCCAGGCAAGCTGCAAAAAATTGATTTTGAAGACGAGACACA 764
BSNT_05681___ 765 AGAAAGCTACGGAGCGGGAAAAATTGAGGA-TTTCAGGCAGTCTCAGCTG 813
|||.|..|.|||.|.|||.||||||||.|| |||| |.|||||.||||||
BPUM_3374___y 765 AGAGACTTTCGGTGTGGGGAAAATTGAAGACTTTC-GTCAGTCACAGCTG 813
BSNT_05681___ 814 CTTGATCTGTACGCGTGTGTCGAGTGCGGCCGCTGTACCAATATGTGCCC 863
.|.||.||.|||||.|||||.||.|||||.||||||||.||||||||.||
BPUM_3374___y 814 ATCGACCTTTACGCTTGTGTGGAATGCGGGCGCTGTACAAATATGTGTCC 863
BSNT_05681___ 864 TGCAACAGGCACCGGAAAAATGCTGTCTCCGATGGACTTGATTTTACGTC 913
.||||||||.||.||.||||||||||||||.|||||.|||||||||.|..
BPUM_3374___y 864 AGCAACAGGTACAGGGAAAATGCTGTCTCCAATGGATTTGATTTTAAGGT 913
BSNT_05681___ 914 TCAGAGACCATCTCACGGAAAAAGGCGCTGCCGTCACCTCG----CGCTC 959
|.||.||.|||.|.||..|.|||||.||.|||.|.||.||| ||
BPUM_3374___y 914 TAAGGGATCATTTAACCAATAAAGGAGCGGCCATTACTTCGAAGACG--- 960
BSNT_05681___ 960 CCCATGGGTGCCCGCAGC-AGCGTTTCGGCATACGAGAGGCAATCAGCTG 1008
||.||||| .|||||.| .||.||..||||.||.|.|||.|||||||||
BPUM_3374___y 961 -CCTTGGGT-ACCGCAACTTGCCTTCAGGCAGACAACAGGAAATCAGCTG 1008
BSNT_05681___ 1009 GCTGCGGCGTCAGCGGGC-AGCGGATCGCAGGAAGCCGCAG------CGG 1051
|| ||.||| ||| ||.||| ||||| .|||| |||
BPUM_3374___y 1009 GC----GCTTCA---GGCAAGAGGA--GCAGG----TGCAGAGGAATCGG 1045
BSNT_05681___ 1052 C-----GCTTGAT-TACAATCCAAGCT-TGATCGGCGACGTCATCACAGA 1094
| |||.||| ||..|||| ..|| |.||.||.||.|||||.|||||
BPUM_3374___y 1046 CTGCCAGCTCGATGTATCATCC-TTCTCTTATTGGTGAGGTCATTACAGA 1094
BSNT_05681___ 1095 GGAAGAAATTTGGGCATGCACCACTTGCCGAAACTGTGAGGATCAATGCC 1144
||||||||||||||||||.||.||.||||||||||||||.||.||.||||
BPUM_3374___y 1095 GGAAGAAATTTGGGCATGTACGACGTGCCGAAACTGTGAAGACCAGTGCC 1144
BSNT_05681___ 1145 CGGTCATGAATGAGCACGTGGATAAAATCATCGACCTCCGCCGCTACCTC 1194
|.|||||||||||||||||.||.|||||.||.||..|.|||.|.||.||.
BPUM_3374___y 1145 CTGTCATGAATGAGCACGTCGACAAAATTATTGATATGCGCAGATATCTT 1194
BSNT_05681___ 1195 GTACTGACAGAAGGAAAAATGGACAGTGACGCCCAGCGCGCAATGACAAG 1244
||.|||||.|||||.|||||||||...||.||.|||||.||.||||||||
BPUM_3374___y 1195 GTGCTGACTGAAGGGAAAATGGACGCAGATGCACAGCGTGCGATGACAAG 1244
BSNT_05681___ 1245 TATTGAGCGGCAGGGGAATCCGTGGGGACTCAACCGCAAGGAACGTGAAA 1294
.|||||.||.||.|||||||||||||||.|.|||||.||.|||.|.||||
BPUM_3374___y 1245 CATTGAACGCCAAGGGAATCCGTGGGGATTGAACCGAAAAGAAAGAGAAA 1294
BSNT_05681___ 1295 ATTGGCGTGATGAGGCGCCGGATGCTGAGA-------------TTCCGAC 1331
|||||||||| ||||||| |.|||||
BPUM_3374___y 1295 ATTGGCGTGA-------------GCTGAGAGAAGATGTACACGTGCCGAC 1331
BSNT_05681___ 1332 TGTAAAAGAAATGAAAAAAGAAGGAAAAGAATTT-GAGTACCTTTTCTGG 1380
.||||||||..|||||||||.| ||..|.|.||| ||.||..|.||||||
BPUM_3374___y 1332 AGTAAAAGAGCTGAAAAAAGCA-GACCAAACTTTCGATTATTTATTCTGG 1380
BSNT_05681___ 1381 GTAGGCTCCATGGGGTCTTACGACAACAGAAGCCAGAAAATCGCAATTTC 1430
||.||.||.||||||.|.||||||||..|.||.||.|||||.||..||.|
BPUM_3374___y 1381 GTTGGTTCAATGGGGGCATACGACAATCGCAGTCAAAAAATTGCGCTTGC 1430
BSNT_05681___ 1431 CTTTGCCAAGCTGCTCAATCACGCGGGCGTGTCCTTCGCGATCCTCGGCA 1480
||||||.|||||.|||||..|.||.|||||.|||||.||.|||||.||||
BPUM_3374___y 1431 CTTTGCAAAGCTTCTCAACGAAGCAGGCGTCTCCTTTGCCATCCTAGGCA 1480
BSNT_05681___ 1481 ATAAAGAAAAAAATTCAGGAGACACGCCGCGCCGCCTCGGAAATGAATTT 1530
||||.||.|||||.||.||.||.||.||..|..|.||.|||||.||||||
BPUM_3374___y 1481 ATAAGGAGAAAAACTCTGGCGATACACCAAGAAGGCTTGGAAACGAATTT 1530
BSNT_05681___ 1531 TTGTTCCAAGAGCTGGCTGA-GAAGAATATTTCTGAATTTGAAAAAAATG 1579
||.|||||||||||.|| || .||.||.|||...|||||..|.|||||..
BPUM_3374___y 1531 TTATTCCAAGAGCTTGC-GACAAAAAACATTGAAGAATTCCAGAAAAACA 1579
BSNT_05681___ 1580 ATGTCAAAAAAATCGTTACGATCGATCCCCATGCATACAATTTATTTAAA 1629
||||||.|||.|||||.|||||.|||||.||.||.|||||||||||||||
BPUM_3374___y 1580 ATGTCACAAAGATCGTCACGATTGATCCGCACGCCTACAATTTATTTAAA 1629
BSNT_05681___ 1630 AACGAATATCCGGATTTCGGATTTGAAGGC-GAGGTTTATCATCATACAG 1678
||.||.|||||.||.|||||..||| |||| ||.||.||.||||||||||
BPUM_3374___y 1630 AATGAGTATCCAGACTTCGGTCTTG-AGGCAGAAGTGTACCATCATACAG 1678
BSNT_05681___ 1679 AAGTGCTGGCCGAGCTTGTGAAA-AACGGAAAATTAAAGCCGCAGCACCC 1727
||.|.||.||.|||||.|||||| ||.|||||.| ||||||.
BPUM_3374___y 1679 AATTACTAGCAGAGCTAGTGAAAGAAGGGAAACT---------AGCACCT 1719
BSNT_05681___ 1728 GCTTCATGA-------GACG--ATTACCTTCCATGATTCATGCTATTTGG 1768
| |.||||| ||.| ||.||||||||.||.||.|||||..|.|
BPUM_3374___y 1720 G-TACATGAAGTGAACGAAGTCATCACCTTCCACGACTCTTGCTACCTAG 1768
BSNT_05681___ 1769 GCCGGTACAATGAAGTCTATGATCCGCCGAGAGAGATTTTGAAAGGCATT 1818
||.|.||.||.|||||.|||||||||||||||||.|||||.||||.|||.
BPUM_3374___y 1769 GCAGATATAACGAAGTGTATGATCCGCCGAGAGACATTTTAAAAGCCATC 1818
BSNT_05681___ 1819 CCGGGCGTGCAGCTTGTTGAAATGGAGAGAAACCGGGAAACCGGCATGTG 1868
||.||.|||..|||....|||||||||.|..|.||.|||||.||.|||||
BPUM_3374___y 1819 CCTGGAGTGACGCTGAGAGAAATGGAGCGTCATCGTGAAACTGGTATGTG 1868
BSNT_05681___ 1869 CTGCGGAGCTGGCGGGGGATTAATGTGGATGGAGGAAGAAACAGGCAACA 1918
||||||.||.||||||||.||||||||||||||.|||||.|||||.|.||
BPUM_3374___y 1869 CTGCGGTGCAGGCGGGGGCTTAATGTGGATGGAAGAAGAGACAGGTACCA 1918
BSNT_05681___ 1919 GGATTAACGTCGCCAGGACAGAGCAAGCGCT-----CGCAGTCAACCCAT 1963
|.||||||...|||.|.||.|||||.|||.| .|||| ||.|
BPUM_3374___y 1919 GAATTAACACTGCCCGAACGGAGCAGGCGTTACAGGTGCAG-----CCGT 1963
BSNT_05681___ 1964 CGGTGATCAGTTCCGGCTGTCCGTACTGTCTCACAATGCTTGGGGACGGC 2013
|..|.||||||||.||.|||||.|||||..|.||.|||||.||.||.||.
BPUM_3374___y 1964 CCATCATCAGTTCAGGATGTCCTTACTGCTTAACGATGCTGGGAGATGGG 2013
BSNT_05681___ 2014 ACAAAGGCGAAGGAAGCTGAAGACCAAGTCAAAACGTAC----GACGTCG 2059
||.||.||||||||||..|||||.||.|| |.|||| |||||||
BPUM_3374___y 2014 ACGAAAGCGAAGGAAGTAGAAGAGCAGGT----AGGTACATTTGACGTCG 2059
BSNT_05681___ 2060 TCGAGCTTCTGGCTCAATCCGTTTTAGGCGCTGATCTGAAAATGGGGGAG 2109
..||.|||||.|...||||.||.||.||||..| ||||||| |.||
BPUM_3374___y 2060 CTGAACTTCTTGAAAAATCAGTGTTTGGCGAGG--CTGAAAA----GCAG 2103
BSNT_05681___ 2110 -------AAGCAATGA 2118
||
BPUM_3374___y 2104 GTTTCGTAA------- 2112
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