Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05682 and BPUM_3375
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:17
# Commandline: needle
# -asequence dna-align/BSNT_05682___ywjE.1.24716.seq
# -bsequence dna-align/BPUM_3375___ywjE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05682___ywjE-BPUM_3375___ywjE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05682___ywjE-BPUM_3375___ywjE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05682___ywjE
# 2: BPUM_3375___ywjE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1369
# Identity: 780/1369 (57.0%)
# Similarity: 780/1369 (57.0%)
# Gaps: 344/1369 (25.1%)
# Score: 1997.5
#
#
#=======================================
BSNT_05682___ 1 ATGAAAGTATTTATC------------GTGATTATGATCAT-TGTCGTTA 37
||||..|.|||.||| .|.|||.|.|||.| |||| |.|
BPUM_3375___y 1 ATGATCGCATTGATCATCCTACTCGTACTCATTGTCATCGTATGTC-TCA 49
BSNT_05682___ 38 TTTTCTTTG-CCTTGA------------------TTCTGC--------TT 60
|.||.||.| ||||.| ||||.| ||
BPUM_3375___y 50 TATTGTTAGACCTTTATATGGGAAAGAAATATTTTTCTACCCGCGCTTTT 99
BSNT_05682___ 61 GA--TATCTTCATGGGCCGTGCCGGATACAGAAAAAAGGCGTACGA-GCC 107
|| .||||| |.|.|| |||.|||..|| || |||
BPUM_3375___y 100 GAACGATCTT--TTGACC-------------AAACAAGCGGT--GATGCC 132
BSNT_05682___ 108 -TGTTTTTTCAAAAAAGAAGAGTGACATCGAATTGATCCACTGCGGCGCT 156
|.||||.||| || ||.| |||.|||
BPUM_3375___y 133 GTCTTTTATCA-----------TG--ATGG---TGAACCA---------- 156
BSNT_05682___ 157 GATCTCGTTGAGCGGATGATGAAGGATATTCGCCAGGCCGCCTCTTCTGT 206
||..||.|.|.|.||.|.|..|||||.|..||.|||.|.||||||.|
BPUM_3375___y 157 ---CTTTTTAATCAGCTGCTCACCGATATACAGCACGCCTCTTCTTCTAT 203
BSNT_05682___ 207 TCACATGATGTTTTTTATTATGAAAAATGATGAGGTCAGCCACAATATGT 256
|||.||||||||.||||||.|.||.||.||..||.|..|.||.|...|||
BPUM_3375___y 204 TCATATGATGTTCTTTATTGTAAAGAACGACAAGATTGGTCAAAGGGTGT 253
BSNT_05682___ 257 ATA----CCTTGCTGAAAACAAAAGCCCAAGCTGGCGTATCCGTTTATTT 302
|| ||| |||||||||||||..||...||.||.|||||.|.|||
BPUM_3375___y 254 -TACAAGCCT---TGAAAACAAAAGCGAAACAAGGAGTTTCCGTCTTTTT 299
BSNT_05682___ 303 GCT------TCTGGATTGGGCGGGCT-GCCGGGCAATTAAAAAAACGGC- 344
.|| || ||||.|| |..|| .||| .||.|..|||.|.|
BPUM_3375___y 300 ACTGACCGATC--GATTAGG-GTCCTATCCG----TTTGATCAAAAGTCC 342
BSNT_05682___ 345 --------GCTGCAGACGATGAAAAATGCCGGCGTCCATGTCCATGTGA- 385
||||.| |||||.| |||.|||| ||.|.|
BPUM_3375___y 343 ATTGACATGCTGGA------GAAAAGT---GGCATCCA-----ATTTTAC 378
BSNT_05682___ 386 ----TGAATCGTCCCCGTTTTCCTTTTTTCTTTTTTC------ACATGCA 425
|.|||...||.|||||.||||||||..|||.|| |||||
BPUM_3375___y 379 TTTTTAAATAAACCTCGTTTCCCTTTTTTGATTTATCGGTTAAACATG-- 426
BSNT_05682___ 426 AAAACGGAATCACCGGAAGATTACGGTGATAGACGGAAAAATCGGTTATA 475
.|.|||||.||.||.||.||||||||.||.|||||.||.||.||||
BPUM_3375___y 427 ----AGAAATCATCGTAAAATCACGGTGATTGATGGAAAGATTGGCTATA 472
BSNT_05682___ 476 TCGGCGGGTTTAACATCGCCGAAGAATATCTTGGAAAGAAGG--CGAAGT 523
|.|||||.|||||.||.|..||.||||||.||||.||.|||| || ||
BPUM_3375___y 473 TTGGCGGATTTAATATTGGTGATGAATATGTTGGGAAAAAGGGACG--GT 520
BSNT_05682___ 524 TCGGCAATTGGGAGGATTATCATCTGCGCATGATGGGAGAAGGCG-TACA 572
|.||||..|||.|||||||||||.|||||||||.|||..|||..| |.||
BPUM_3375___y 521 TTGGCATATGGAAGGATTATCATTTGCGCATGACGGGGCAAGTTGTTGCA 570
BSNT_05682___ 573 TGATCTTCAAACGC-----TTTTTGCTTCTGATCTAAAACGAAATACCGG 617
|||||.|| || |||||| ..||||.| |||||||
BPUM_3375___y 571 -GATCTCCA---GCATGTGTTTTTG--AATGATTT--------ATACCGG 606
BSNT_05682___ 618 A-ATCGAACTGG-GTTC-------------GGATGTTTGGCCAAAGCTT- 651
| || |||| .||| .|||||||..|| .||||
BPUM_3375___y 607 ACAT----CTGGCATTCACCAGCTGCAATATGATGTTTTTCC--TGCTTT 650
BSNT_05682___ 652 ----CAG---------CAAGGGGCTATTTCTCACAAGATATATGCGACCG 688
||| |||.| |||||.| ||..||
BPUM_3375___y 651 GGAACAGGGAACACTACAATG----------CACAACA------CGCGCG 684
BSNT_05682___ 689 AC----GGTTATTCCCTTGAAAACATATACTTGGCCAACAT-TGCA-CAA 732
|| ||| |||.|||.|.|...|.||.||..|.||.|| |.|| ||.
BPUM_3375___y 685 ACTGCTGGT--TTCTCTTTAGAGGCTTTATTTCTCAAAGATATTCAGCAG 732
BSNT_05682___ 733 GCGAAGAATCGCCTTACGG-------TTTGCACGCCTTATTACATTCCAT 775
||||.||| ||.| ||||.||||||||.|..|||||||
BPUM_3375___y 733 GCGAGGAA-------ACAGATCATCATTTGTACGCCTTACTTTATTCCAT 775
BSNT_05682___ 776 CAAAACCGCTTCAAGAGGCCCTTATTAACGCAAGAAAAAACGGCGTATCC 825
|....||.||.|...|.||.||..||.|.|||.|||||...|||||..|.
BPUM_3375___y 776 CTGCTCCTCTACTGAATGCACTGCTTGATGCACGAAAACGAGGCGTCACG 825
BSNT_05682___ 826 G-TGAGAATCATTGTACCGATGAAATCAGACCATCCGCTGGTACGAGAAG 874
| ||| ||||||..|.||.||||||.||||.|||||.||.||...|||.|
BPUM_3375___y 826 GTTGA-AATCATCATCCCAATGAAAGCAGATCATCCACTTGTTAAAGAGG 874
BSNT_05682___ 875 CAGCTTTTACGTATTATT---CGGAGCTCTTGGATGCC---GGCTGTCTT 918
|.|..||| .|||||| .|||.|||.| |||| |||||.|||
BPUM_3375___y 875 CTGGATTT---CATTATTTAAAGGATCTCAT---TGCCTCTGGCTGCCTT 918
BSNT_05682___ 919 ATTTATCGTTATTATCAAGGATTTTATCATGTAAAAGCC-------CTCA 961
.|||||||||.||||.|||||||||||||||..|||||| .|.|
BPUM_3375___y 919 GTTTATCGTTTTTATAAAGGATTTTATCATGCGAAAGCCATTCTGATTGA 968
BSNT_05682___ 962 TCATAGACGACCATCTCAGCATTATCGGAACAGCCAACTTCGATAAACGA 1011
|||.||||| |||.||.|||.|.||.||.||.||.||||||||.
BPUM_3375___y 969 TCAGAGACG-------CAGTATCATCAGTACGGCAAATTTTGATAAACGC 1011
BSNT_05682___ 1012 AGCCTGTTTTTAAATGAAGAGGTGAATGTCGAAATTGATGACGAAGCGTT 1061
|||.||||||||||.||.||.||..|.||||..||||||||.|..|..||
BPUM_3375___y 1012 AGCTTGTTTTTAAACGAGGAAGTTGACGTCGCTATTGATGATGTCGACTT 1061
BSNT_05682___ 1062 TACAAGTGAAGTCTATGC-CACGATTGAGGAGGATATGAAAAAGTCG-GA 1109
||| ||| |||| |.|||| |.||||.||| ||
BPUM_3375___y 1062 TAC------------TGCACACG-TAGAGG-------GGAAAATTCGCGA 1091
BSNT_05682___ 1110 GCGGCTGACGATGGAGG-----------ATTTCAGCAAGCGCACATTCAG 1148
|| || ||.||.| ||..||| |||.| |.||| |
BPUM_3375___y 1092 GC-----AC-ATAGAAGTGTCTGAGCTTATGACAG-AAGAG-AAATT--G 1131
BSNT_05682___ 1149 G--CAGCGCCCG--------------GC-GGAAT-GGCT--CGGCAGGGC 1178
| |||||.||| || .|||| |||| ||.||.|
BPUM_3375___y 1132 GCACAGCGTCCGCTTTTGTCACGTATGCTTGAATGGGCTGCCGCCATG-- 1179
BSNT_05682___ 1179 ATTATCTTATTTCTTATAA 1197
||.||||||||.||||||
BPUM_3375___y 1180 -TTTTCTTATTTTTTATAA 1197
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