Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05732 and BPUM_3386

See Amino acid alignment / Visit BSNT_05732 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:18
# Commandline: needle
#    -asequence dna-align/BSNT_05732___speB.1.24716.seq
#    -bsequence dna-align/BPUM_3386___speB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05732___speB-BPUM_3386___speB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05732___speB-BPUM_3386___speB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05732___speB
# 2: BPUM_3386___speB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 879
# Identity:     663/879 (75.4%)
# Similarity:   663/879 (75.4%)
# Gaps:          12/879 ( 1.4%)
# Score: 2445.5
# 
#
#=======================================

BSNT_05732___      1 ATGAGATTTGATGAAGCTTATTCAGGAAAAGTATTTATCGCGAGCCGTCC     50
                     ||||||||.||.||.|||||||||||||||||.|||||.|..||.|.| |
BPUM_3386___s      1 ATGAGATTCGACGAGGCTTATTCAGGAAAAGTGTTTATTGGAAGTCAT-C     49

BSNT_05732___     51 CGA-GTGGGAAGAGGCGGACGCCATTCTTTACGGCATGCCGATGGACTGG     99
                     ||| .||||||||.||..|.|.||||.|.|||||.|||||||||||.|||
BPUM_3386___s     50 CGACATGGGAAGATGCAAAGGTCATTTTATACGGGATGCCGATGGATTGG     99

BSNT_05732___    100 ACAGTCAGCTATCGCCCGGGCTCACGCTTTGGTCCAAGCAGAATCCGTGA    149
                     ||.|||||.|||.|.||.||||||||.|||||.||||.|.|.||.|||||
BPUM_3386___s    100 ACCGTCAGTTATAGACCAGGCTCACGTTTTGGCCCAAACCGTATTCGTGA    149

BSNT_05732___    150 GGTGTCAATCGGCCTTGAGGAATACAGCCCATATTTAGACCGCGATCTGG    199
                     .||.||.|||||..|.|||||||||||.||.||||||||.||.||.||  
BPUM_3386___s    150 AGTATCGATCGGTTTAGAGGAATACAGTCCTTATTTAGATCGTGAGCT--    197

BSNT_05732___    200 CTGACTTGA---AC--TTCTTTGACGCTGGCGACATTCCGCTGCCGTTCG    244
                        ||..||   ||  ||||||||.||.||.||||||||.||.||.||.|
BPUM_3386___s    198 ---ACACGAGGTACCATTCTTTGATGCCGGTGACATTCCACTTCCTTTTG    244

BSNT_05732___    245 GAAATCCGCAGCGAAGCCTGGATATGATTGAAGAGTACGTGGACAGCATT    294
                     |||||.|.|||..||||.|.||..|.|||||||||||.||.|||||||||
BPUM_3386___s    245 GAAATGCACAGAAAAGCTTAGACTTAATTGAAGAGTATGTCGACAGCATT    294

BSNT_05732___    295 TTAGAAAAAGGGAAGTTCCCAATGGGTATGGGGGGAGAGCACCTCGTGTC    344
                     |||||||||||||||||.|||.|.||.|||||.||.|||||.||.||.||
BPUM_3386___s    295 TTAGAAAAAGGGAAGTTTCCATTAGGAATGGGCGGCGAGCATCTTGTATC    344

BSNT_05732___    345 ATGGCCTGTCATTAAAGCGATGTACAAGAAATACCCAGACCTTGCGATTA    394
                     .|||||.||..|....||||||.|.||||||||.||.||..|.||.||||
BPUM_3386___s    345 TTGGCCAGTTTTCCGCGCGATGCATAAGAAATATCCTGATTTGGCCATTA    394

BSNT_05732___    395 TCCATTTTGACGCACATACAGATCTTCGAGTTGATTATGAGGGAGAACCG    444
                     |||||.|.|||||||||||.||||||||.|..||.||.|||||.||.|||
BPUM_3386___s    395 TCCATATGGACGCACATACGGATCTTCGTGAGGAATACGAGGGTGAGCCG    444

BSNT_05732___    445 CTTTCTCACTCCACGCCGATCCGTAAGGCGGCAGAATTGATCGGACCGCA    494
                     ||.|||||.||.||.|||||.|||||.|..||||.|.|.||.|||||..|
BPUM_3386___s    445 CTGTCTCATTCAACCCCGATTCGTAAAGTAGCAGGACTCATTGGACCTGA    494

BSNT_05732___    495 CAATGTGTATTCATTCGGAATCCGTTCCGGCATGAAAGAAGAGTTTGAAT    544
                     .|||||||..||.|||||.||.|||||.||.|||||.|||||.|||||||
BPUM_3386___s    495 GAATGTGTTCTCTTTCGGCATTCGTTCTGGGATGAAGGAAGAATTTGAAT    544

BSNT_05732___    545 GGGCGAAGGAAAACGGCATGCACATCTCAAAATTTGAAGTGCTTGAACCG    594
                     ||||.||.|||...||||||.||||.||.||||||||||||||.||.||.
BPUM_3386___s    545 GGGCAAAAGAAGCGGGCATGTACATTTCTAAATTTGAAGTGCTGGAGCCA    594

BSNT_05732___    595 CTGAAAGAGGTGCTTCCGAAGCTGGCGGGCCGTCCGGTTTATGTCACAAT    644
                     .||||..|.||..|.||.|||||...|||.||.||.||||||||.||.||
BPUM_3386___s    595 TTGAAGAAAGTATTGCCAAAGCTAAAGGGGCGCCCAGTTTATGTGACGAT    644

BSNT_05732___    645 TGACATTGACGTATTAGACCCTGCACACGCACCGGGTACAGGAACGGTTG    694
                     .||||||||.|||.|.|||||.||.||.|||||.||||||||.|||||.|
BPUM_3386___s    645 CGACATTGATGTACTCGACCCAGCTCATGCACCTGGTACAGGCACGGTAG    694

BSNT_05732___    695 ACGCCGGCGGCATCACGTCTAAAGAACTGCTTGCATCGGTCCATGAAATT    744
                     |.||.|||||.||.||.||.|||||.|||||||||||..|.||||..|||
BPUM_3386___s    695 ATGCTGGCGGTATTACATCAAAAGAGCTGCTTGCATCTATTCATGCGATT    744

BSNT_05732___    745 GCGCGTTCAGAGGTAAACGTAAAGGGCGCTGATTTAGTGGAAGTCGCGCC    794
                     ||..|.||.||.||..|.|||...||.||.||..|.||.||.||.||.||
BPUM_3386___s    745 GCAGGATCTGATGTGCAAGTAGTCGGTGCAGACCTTGTTGAGGTAGCACC    794

BSNT_05732___    795 GGTATACGACCACTCAGAGCAAACGGCAAACACAGCCAGCAAAATCATCC    844
                     .||||||||.||.||.||.|||||.||.||.|||||.|||||..|..|.|
BPUM_3386___s    795 TGTATACGATCATTCTGACCAAACAGCGAATACAGCGAGCAAGCTTTTAC    844

BSNT_05732___    845 GTGAAATGCTGCTTGGGTTTGTGAAATAA    873
                     |.|||||||||||||||||||||||||||
BPUM_3386___s    845 GCGAAATGCTGCTTGGGTTTGTGAAATAA    873


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05732 and BPUM_3386

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
