Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05740 and BPUM_3390
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:18
# Commandline: needle
# -asequence dna-align/BSNT_05740___ywhC.1.24716.seq
# -bsequence dna-align/BPUM_3390___ywhC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05740___ywhC-BPUM_3390___ywhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05740___ywhC-BPUM_3390___ywhC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05740___ywhC
# 2: BPUM_3390___ywhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 722
# Identity: 437/722 (60.5%)
# Similarity: 437/722 (60.5%)
# Gaps: 121/722 (16.8%)
# Score: 1148.5
#
#
#=======================================
BSNT_05740___ 1 ------TTGGACC-GTTTTTTATATTATCCGTTATCTTTAATGCCATACC 43
|||.||| .|||.||.| .|||||.|||....|.||.|||||..
BPUM_3390___y 1 ATGCCTTTGAACCAATTTCTTGT-GTATCCATTAGAACTGATTCCATATG 49
BSNT_05740___ 44 TCGTCATCACGCTAATTGTGTCGTTTACGATGCACGAGCTTGCCCACGCT 93
|||.|||.||.||..||||..|.|||||||||||||||.|.||.||.||.
BPUM_3390___y 50 TCGCCATTACACTTGTTGTTGCATTTACGATGCACGAGTTGGCGCATGCA 99
BSNT_05740___ 94 TATGTCGCATACAAATTCGGTGACGATACGGCGAAAAAACAAGGAAGACT 143
|||||.||.||....|||||.|||...||.||.||.||.|||||.|||||
BPUM_3390___y 100 TATGTTGCGTATCGTTTCGGAGACCCAACAGCTAAGAACCAAGGGAGACT 149
BSNT_05740___ 144 GACGCTGAATCCCATTAAACACCTTGATCCGTTCGGAACCATTTTGATTC 193
.||..|.|||||..|.||.||.||||||...||.||.||.||||||||..
BPUM_3390___y 150 CACATTAAATCCGTTGAAGCATCTTGATGTATTTGGGACGATTTTGATCT 199
BSNT_05740___ 194 TGGTGGCCGGATTCGGGTGGGCGCGCCCCATTCCCGTGAATCGCCGTTTC 243
|.||.||.||.||.||.||||||.|.||..|.||.|||||| ||||.|
BPUM_3390___y 200 TTGTCGCTGGGTTTGGCTGGGCGAGACCTGTGCCGGTGAAT---CGTTAC 246
BSNT_05740___ 244 ---TTTAAGAAACCCCGGCTT-GCTGG--TGTGCTCGTATCTATAGCCGG 287
||||| ||||||..|||| ||.|| |.|| |||.||.||.||.||
BPUM_3390___y 247 CATTTTAA-AAACCCGCGCTTAGCAGGAATCTG--CGTCTCGATTGCTGG 293
BSNT_05740___ 288 GCCCGTCAGTAACCTGATTCTTGCGTTTATTGGTTTCTTTTTGTTAGTGT 337
.||..|.||||||.||.|..|.||||||.|.||.|..||..|||..|||.
BPUM_3390___y 294 CCCTTTAAGTAACTTGGTGTTGGCGTTTCTAGGCTGTTTCGTGTACGTGC 343
BSNT_05740___ 338 TGATGCATGCGTACGGAAT-------GGAAATGCT--TGCGGCGTTCAGC 378
|..|.|| |.||| |||...||| ||| ||.||.|||
BPUM_3390___y 344 TTCTTCA-------GAAATTTGGCGGGGAGTCGCTCATGC-GCTTTGAGC 385
BSNT_05740___ 379 ACGGGGCTGGATCAGTTTTTTTC----TATTTGGATACAGCTGAATCTTG 424
|.||..|||||.| |||.||| |.||| |||.|..||||..|..
BPUM_3390___y 386 -CTGGAGTGGATTA--TTTCTTCCGAATCTTT--ATAAACTTGAACGTCA 430
BSNT_05740___ 425 TCTTGTTTTTATTTAATCTGCTGCCGCTTCCTCCGCTCGATGGCTATCGA 474
|.|||||..|||||||..|..||||..||||.|||||.|||||.|||||.
BPUM_3390___y 431 TTTTGTTCCTATTTAACTTATTGCCAATTCCGCCGCTGGATGGGTATCGT 480
BSNT_05740___ 475 ATTATAGAAGATCTCGT---TCCGC----CGGGCGTGCGTGCCAAAATGA 517
|||||.||.||..|||| |||.| | |||||.|||||||
BPUM_3390___y 481 ATTATTGAGGACGTCGTTAGTCCCCATATC-------CGTGCGAAAATGA 523
BSNT_05740___ 518 CGCAGGCGGA---GAGC--TACGG---------CTTTATCGTATTTTTGG 553
|||| | ||.| ||.|| ||||.||.||||
BPUM_3390___y 524 CGCA-----ATTTGAACAATATGGGATCATTATCTTTCTCATATT----- 563
BSNT_05740___ 554 TGC-TGTTTGTGACACCGCTAGGA-----TCTTACGTGCTGTGG-CCGAT 596
| ||.|| ||.||||||||| |.|| |.||| ||..|
BPUM_3390___y 564 --CGTGATT---ACGCCGCTAGGACAGTTTGTT------TTTGGTCCATT 602
BSNT_05740___ 597 GCTC--AATGCAGGAAGAGATTCGAT-----TTTAAAGCTGTTTTCAGCG 639
|.|| |||||.|||..|.||...|| ||||| |.||.|
BPUM_3390___y 603 GATCGGAATGCGGGATCAAATCATATACTGGTTTAA---TCTTAT----- 644
BSNT_05740___ 640 ATATTTCAA-CCGCTTTTGTAG 660
|||.|| |||||..|.|||
BPUM_3390___y 645 ---TTTGAAGCCGCTGCTTTAG 663
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