Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05774 and BPUM_3421

See Amino acid alignment / Visit BSNT_05774 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:21
# Commandline: needle
#    -asequence dna-align/BSNT_05774___ywfC.1.24716.seq
#    -bsequence dna-align/BPUM_3421___bacB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05774___ywfC-BPUM_3421___bacB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05774___ywfC-BPUM_3421___bacB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05774___ywfC
# 2: BPUM_3421___bacB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 744
# Identity:     521/744 (70.0%)
# Similarity:   521/744 (70.0%)
# Gaps:          72/744 ( 9.7%)
# Score: 1756.0
# 
#
#=======================================

BSNT_05774___      1 ATGAAAACTAAAGAAGATATGCAGGAGCTTTATTTCCCGACA--CC--GA     46
                     |||.|||||.||.||.|.|.|||.||.|..|||||.|| |||  ||  ||
BPUM_3421___b      1 ATGCAAACTGAACAAAAGACGCAAGAACGATATTTTCC-ACAAGCCAAGA     49

BSNT_05774___     47 AATTAATTGAATGGGAAAACGGAGTGAGGCAGTATTCAACCGTACGAGGG     96
                     |   |||.||||||||.||.||.||.|..||.|||||.||.||..||||.
BPUM_3421___b     50 A---AATAGAATGGGAGAATGGTGTCACACAATATTCCACAGTCAGAGGT     96

BSNT_05774___     97 GATACTGAAGTATTAATGTCTTACGTCCCGCCGCATACCAATGTTGAACC    146
                     |||||.|||||||||||.||.||||||||.||.||.||.|...|||||||
BPUM_3421___b     97 GATACGGAAGTATTAATCTCATACGTCCCTCCTCACACGATCATTGAACC    146

BSNT_05774___    147 CCATCAGCAT----AAGGAGGTCCAAATCGGCATGGTCGTTTCT----GG    188
                     .||..|||||    |||.|    ||||||||||   ||||.| |    ||
BPUM_3421___b    147 TCACGAGCATCCCGAAGCA----CAAATCGGCA---TCGTAT-TAAAAGG    188

BSNT_05774___    189 CGAGCTGATGATGACTGTCGG-----AGATGTGACAAGAAAAATGA--CA    231
                     ||||||....|||||.|||||     .|||         ..|||.|  ||
BPUM_3421___b    189 CGAGCTTCAAATGACGGTCGGCCCATCGAT---------CCAATTACTCA    229

BSNT_05774___    232 GCC--TTGGAATCTGCCTATATCGCGCCGCCGCATGTGCCTCACGGGGCA    279
                     .||  ||.|||||.|||||||||||.||.||...|||.||||||||.||.
BPUM_3421___b    230 CCCCTTTAGAATCAGCCTATATCGCACCACCTTTTGTCCCTCACGGCGCT    279

BSNT_05774___    280 AGAAACGACACAGACCAAGAAGTGATTGCTATTGATATCAAGCGGCTGAA    329
                     ...|||...|||||..||||||||||||||||||||||.||..|..|.||
BPUM_3421___b    280 TCTAACCTAACAGATGAAGAAGTGATTGCTATTGATATTAAAAGATTAAA    329

BSNT_05774___    330 AGCT---GATGAAACATATACA-AG----TCCTGAGGAC-TACTTTTTGG    370
                     ||.|   ||.||     ||||| ||    ||||    || ||.||.||.|
BPUM_3421___b    330 AGATGGCGAGGA-----ATACACAGCGCCTCCT----ACTTATTTCTTAG    370

BSNT_05774___    371 ATATTTTCAAAACAAGAGACCTGCTGCCGGGCATGGAAGTCACGTTCTTT    420
                     |.||||||||||||.|.||..|.||.||.|||||||||||.||.||||||
BPUM_3421___b    371 ACATTTTCAAAACACGGGATTTACTCCCTGGCATGGAAGTGACCTTCTTT    420

BSNT_05774___    421 GTTGAGGATTGGGTAGAAATTATGCTTGCCAAAATCCCTGGAAATGGCGG    470
                     ||||||||||||.|.||..|.|||.|||||||.||.||||||||||||||
BPUM_3421___b    421 GTTGAGGATTGGATGGAGCTCATGATTGCCAACATTCCTGGAAATGGCGG    470

BSNT_05774___    471 AGAAATGCCTTTCCATAAACATCGGAATGAACAAATAGGCATCTGCATCG    520
                     ||||||||||||.||.|||||.||.|||||||||||.|||||.||||||.
BPUM_3421___b    471 AGAAATGCCTTTTCACAAACACCGCAATGAACAAATCGGCATTTGCATCA    520

BSNT_05774___    521 GCGGCGGCTATGACATGACGGTCGAAGGCTGCACAGTCGAGATGAAATTC    570
                     ||||.||.|||||.|||||..|.|||||||..||||...|.|||..|||.
BPUM_3421___b    521 GCGGAGGTTATGATATGACCATTGAAGGCTTTACAGAGAAAATGGCATTT    570

BSNT_05774___    571 GGCACAGCCTATTTCTGTGAGCCTCGCGAAGATCATGGTGCCATCAA-CC    619
                     ||.||..|||||||||||||.|||...||||||||.||.||.||.|| ||
BPUM_3421___b    571 GGTACTACCTATTTCTGTGACCCTAAGGAAGATCACGGGGCAATAAATCC    620

BSNT_05774___    620 GTTCAGAAA-----AAGAATCAAAATCGATTAATATCTTCTTCCCGCCGC    664
                           |||     |||..|||||.||.||||||.|||||||.||.||.|
BPUM_3421___b    621 ------AAAGCCGGAAGCCTCAAAGTCTATTAATCTCTTCTTTCCTCCCC    664

BSNT_05774___    665 GCTATAACAGGGCAAAAGCAAAAAAAATGAAGGCGGATGAATGA    708
                     |||||||..||...|||.|||||.|...|||||.|.|..|||||
BPUM_3421___b    665 GCTATAATCGGTTGAAACCAAAAGAGTCGAAGGTGAAGAAATGA    708


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