Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05790 and BPUM_3428
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_05790___spsJ.1.24716.seq
# -bsequence dna-align/BPUM_3428___spsJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05790___spsJ-BPUM_3428___spsJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05790___spsJ-BPUM_3428___spsJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05790___spsJ
# 2: BPUM_3428___spsJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1006
# Identity: 664/1006 (66.0%)
# Similarity: 664/1006 (66.0%)
# Gaps: 98/1006 ( 9.7%)
# Score: 2061.0
#
#
#=======================================
BSNT_05790___ 1 ATGGCAAAATCATATTTAATTACAGGCGGAGCCGGCTTCATCGGGCTCAC 50
|||.|.||.||.||||||||||||||||||||.||.||.||.||.||.|.
BPUM_3428___s 1 ATGACGAAGTCTTATTTAATTACAGGCGGAGCGGGATTTATTGGACTGAA 50
BSNT_05790___ 51 GTTTACAAAGCTCATGCTGAGGGAAACGGATGCGCGCATTACCGTTTTAG 100
.|||...|||||..||||...||||||.||||..||..|.||.|||||.|
BPUM_3428___s 51 TTTTGTGAAGCTGCTGCTTCAGGAAACAGATGTCCGGCTCACTGTTTTTG 100
BSNT_05790___ 101 ATAAACTGACGTACGCCAGCCACCCGGAGGAAATGGAAAAATTA--AAGC 148
|.||..|.||.||.|||||.||.||.||.||.|||||..||||| ||
BPUM_3428___s 101 ACAAGTTAACATATGCCAGTCATCCAGAAGAGATGGATGAATTATTAA-- 148
BSNT_05790___ 149 AAAACAGC-----CGTTTTCGCTTTGTGAAAGGGGACATCAGCGTTCAGG 193
||| |.||||||.|||.|..||||.||.||||.|.||||..
BPUM_3428___s 149 -----AGCTGTCTCATTTTCGTTTTATTCAAGGAGATATCACCCTTCAAC 193
BSNT_05790___ 194 AGGATATCGACCGCGCGTTTGATGAGACCTACGATGGCGTCATTCACTTC 243
|.||..|.||.|..|||||||||||...|||.||||...|||||||.||.
BPUM_3428___s 194 ATGAGCTGGATCAAGCGTTTGATGAAGTCTATGATGCTATCATTCATTTT 243
BSNT_05790___ 244 GCAGCAGAATCGCATGTGGACAGAAGCATT---TCCCAAGCAGAGCCGTT 290
|||||.|||||.|||||.||..|.||.||| || .|||||||||||
BPUM_3428___s 244 GCAGCGGAATCCCATGTTGATCGCAGTATTGAATC---GGCAGAGCCGTT 290
BSNT_05790___ 291 TA-TCACCACAAATGTCATGGGGACATACCGATTGGCGGAAGCGGTCTTG 339
|| ||| .||||||||..|.||.||.||.||..||..|||.||.|||||.
BPUM_3428___s 291 TATTCA-AACAAATGTGCTCGGCACTTATCGTATGCTGGAGGCAGTCTTA 339
BSNT_05790___ 340 AAAGGAAAAGCCAAGAAGCTGATTCATATTTCAACAGATGAGGTATACGG 389
||||||||.||.||.|||||.|||||||||||||||||.||.|||||.||
BPUM_3428___s 340 AAAGGAAAGGCGAAAAAGCTTATTCATATTTCAACAGACGAAGTATATGG 389
BSNT_05790___ 390 GGATTTAAAAGC-GGATGATCCCGCGTTTACAGAAACGACGCCGCTTTCT 438
.||||| ..||| .|||||..|.||.||.||||||...||.||.|||||.
BPUM_3428___s 390 AGATTT-GGAGCTAGATGACTCAGCTTTCACAGAACAAACACCACTTTCA 438
BSNT_05790___ 439 CCTAATAACCCATACTCAGCCAGCAAAGCAAGCTCTGATTTGCTCGTGTT 488
||.|||||.||.||.||.||.|||||.|||||.||.||..||||.|||..
BPUM_3428___s 439 CCGAATAATCCTTATTCTGCAAGCAAGGCAAGTTCAGACCTGCTTGTGAA 488
BSNT_05790___ 489 GTCTTATGTGAAAACCCACAAGCTTCCGGCCATCATTACACGATGCAGCA 538
.||||||.|..|.||.|||.|..|.||.||.||.||.|||.|||||||||
BPUM_3428___s 489 ATCTTATATCCACACTCACCAATTACCCGCAATGATCACAAGATGCAGCA 538
BSNT_05790___ 539 ACAATTACGGACCTTATCAGCACAGCGAAAAAATGATTCCGACGATTATC 588
||||.||||||||.||||||||....||||||.|.||.|||||||||||.
BPUM_3428___s 539 ACAACTACGGACCATATCAGCATGAAGAAAAATTAATACCGACGATTATT 588
BSNT_05790___ 589 CGTCATGCGAAGCAGGGCCTGCCTG---------TTCCGCTGTATGGCGA 629
.|..|.|| ||.|| .|| |.|||.|.|||||.||
BPUM_3428___s 589 AGAAAAGC-AATCA--------ATGGAGAAAAGATCCCGATTTATGGGGA 629
BSNT_05790___ 630 TGGACTCCAGATCCGAGACTGGCTGTTTGCGGAGGATCATTGCCGCGCGA 679
.||.|..|||||.||.||.|||||||.||..||||||||| ||||
BPUM_3428___s 630 CGGCCAGCAGATTCGCGATTGGCTGTATGTTGAGGATCAT------GCGA 673
BSNT_05790___ 680 ------TCAAGCTGATTTTAGAAAAAGGGACCGACGGCGAGGTGTATAAC 723
|.||||.|.|..|.|||||.||.||.|..||..|.|||||.||.
BPUM_3428___s 674 AAGCTGTAAAGCAGGTCCTTGAAAACGGAACAGCTGGGCAAGTGTACAAT 723
BSNT_05790___ 724 ATCGGCGGCGGAAATGAACGCACGAATAAAGAGCTGGCGAGTGTCATTTT 773
||||||||.||.||.||....||||||...||..||.|.|....||||.|
BPUM_3428___s 724 ATCGGCGGTGGCAACGAGAAAACGAATCTTGATTTGACCAAGACCATTCT 773
BSNT_05790___ 774 GAAGCATCTGGG---CTGTGAGGA----ATTG---TTCGCCCACGTGGAA 813
||.|||.||.|| |.||.|.|| |||| || ||.|||
BPUM_3428___s 774 GACGCAGCTCGGGATCAGTCATGACCGTATTGCGTTT-------GTTGAA 816
BSNT_05790___ 814 GACCGAAAAGGGCATGACCGGCGCTATGCGATCAATGCATCA--AAGCTG 861
|||||||||||.||||||.|.||.||||||||..|.|| || ||.||.
BPUM_3428___s 817 GACCGAAAAGGACATGACAGACGGTATGCGATTGACGC--CAGTAAACTA 864
BSNT_05790___ 862 AAAAACGAACTGGGCTGGCGGCAGGAAGTGACG---TTTGAAGAAGGCAT 908
||||..|..||.||||||..|||| .||||| |||||||.|||.||
BPUM_3428___s 865 AAAAGAGGGCTTGGCTGGACGCAG---TTGACGTCATTTGAAGCAGGTAT 911
BSNT_05790___ 909 TGCGCGTACGATTCAGTGGTATACAGAC--AAT-------GACCGATGA- 948
||.....|||||..|.|||||| |..|| ||| ||.|||.||
BPUM_3428___s 912 TGAAAAAACGATCAATTGGTAT-CGTACCAAATATGATCAGAGCGAAGAA 960
BSNT_05790___ 948 ------ 948
BPUM_3428___s 961 GGGTGA 966
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