Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05848 and BPUM_3479
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:26
# Commandline: needle
# -asequence dna-align/BSNT_05848___ywcA.1.24716.seq
# -bsequence dna-align/BPUM_3479___ywcA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05848___ywcA-BPUM_3479___ywcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05848___ywcA-BPUM_3479___ywcA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05848___ywcA
# 2: BPUM_3479___ywcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1579
# Identity: 1135/1579 (71.9%)
# Similarity: 1135/1579 (71.9%)
# Gaps: 74/1579 ( 4.7%)
# Score: 3949.0
#
#
#=======================================
BSNT_05848___ 1 ATGAATATGACTGCTTTTTTATTATTTTTGGCGATTGTTGGTCTGACGCT 50
||||..|||||.||||||.|.|||||..|.|||||.||.||.||.||
BPUM_3479___y 1 ATGAGCATGACCGCTTTTATTTTATTCATAGCGATCGTAGGGCTCAC--- 47
BSNT_05848___ 51 TATT----ATCACGTATTTTGCAGCGAAGCGGACGAAAACGA------CG 90
||| ||||||||||||||.||||| .||||||| ||
BPUM_3479___y 48 -ATTGGTCATCACGTATTTTGCTGCGAA------AAAAACGAGCAATGCG 90
BSNT_05848___ 91 AGTGAGTTTTATACGGCGGGCGGCGGGCTCACCGGCGTTCAGAATGGACT 140
||.||.|||||.||.||.||.||.||.||.||.||..|||||||.|||||
BPUM_3479___y 91 AGCGACTTTTACACAGCAGGTGGAGGTCTGACTGGGTTTCAGAACGGACT 140
BSNT_05848___ 141 GGCAATTGCCGGTGACTACATGTCTGCCGCCTCGTTTCTCGGGATTGCCG 190
.||.||.|||||.|||||.||||||||.||.||.|||.|.||.||.||.|
BPUM_3479___y 141 TGCCATCGCCGGAGACTATATGTCTGCTGCATCATTTTTAGGAATCGCTG 190
BSNT_05848___ 191 GAATGATTGCGTTATATGGATTTGATGGCTTCTTTTACAGCATCGGTTTT 240
|||||||.||.||..||||||||||||||||.||.||.|||||.||.|||
BPUM_3479___y 191 GAATGATCGCTTTGAATGGATTTGATGGCTTTTTCTATAGCATTGGCTTT 240
BSNT_05848___ 241 CTGGTGGCTTATCTCGTTG-TCTTGTACATCGTGGCGGAGCCGCTTCGGA 289
||.|||||.|||||.||.| |||| |||.|.|||||.||.||||||||.|
BPUM_3479___y 241 CTCGTGGCGTATCTTGTCGTTCTT-TACGTTGTGGCCGAACCGCTTCGAA 289
BSNT_05848___ 290 ATCTTGGAAAGTACACGATGGCAGACATGATTGCCGCTCGCTTTAAA--- 336
||||.||.||.||.||||||||.||.||||||||.||.||.||||||
BPUM_3479___y 290 ATCTAGGTAAATATACGATGGCTGATATGATTGCTGCACGATTTAAACGC 339
BSNT_05848___ 337 ---GAAAAGAAAATCCGCGGTGTCGCGGCTCTCAATACCATTGCCATCTC 383
| ..||.||.||.||.||.||..|.||.||.||..|..||||
BPUM_3479___y 340 CCTG------CCATTCGAGGGGTAGCCGCGTTTAACACAATCACAGTCTC 383
BSNT_05848___ 384 TACTTTTTATATGATCGCCCAGCTCGTGGGGGCGGGAGCGCTGATCAAAC 433
|||||||||||||||.||.|||||.||.|||||.||.||..|.|||||.|
BPUM_3479___y 384 TACTTTTTATATGATTGCACAGCTTGTTGGGGCAGGTGCATTAATCAAGC 433
BSNT_05848___ 434 TGCTTCTAGG--------GCTGGATTATACCGCGGCTGTCCTCATCGTCG 475
|||||||.|| .||||||| ||.||.||.|||||.|
BPUM_3479___y 434 TGCTTCTTGGCATTGATTACTGGATT--------GCGGTGCTAATCGTTG 475
BSNT_05848___ 476 GAGTGCTGATGACCATTTATGTCGTGTTTGGCGGCATGATCGCGACAAGC 525
|.||..|||||||||||||||||||||||||||||||||||||.||.|||
BPUM_3479___y 476 GTGTCTTGATGACCATTTATGTCGTGTTTGGCGGCATGATCGCAACGAGC 525
BSNT_05848___ 526 TGGGTTCAAATTATTAAAGCTGTTTTACTGATGGCCGGCACACTCGTGAT 575
|||||.||.||.|..||.|||||..|.||.|||...||.|||||..|.||
BPUM_3479___y 526 TGGGTACAGATCACAAAGGCTGTGCTTCTCATGCTAGGAACACTGATTAT 575
BSNT_05848___ 576 TTCGATTATCGTGTTTTCGAAATTCGGCTTTAGCCTTAATACCATGTTTG 625
|||..|..|.||.|||.|.||.||.|..||||||||....|..|||||||
BPUM_3479___y 576 TTCACTGCTTGTATTTGCAAAGTTTGATTTTAGCCTGCTCAAGATGTTTG 625
BSNT_05848___ 626 AACAGATGAAAACGGCTACTCCGCTTGGCGCTGAT--TTTTTGAATCCCG 673
|..||||||||||.||.||.|||||.||.| ||| |||.|..|.||.|
BPUM_3479___y 626 AGGAGATGAAAACAGCGACCCCGCTCGGTG--GATCATTTCTTCACCCGG 673
BSNT_05848___ 674 GAAATAAATACAAGGTGCCGCTTGAGACCTTGTCGTTAAACTTGGCACTC 723
||||||||||..|.|||||..|.|||||||||||.||.|||.|.||..|.
BPUM_3479___y 674 GAAATAAATATGATGTGCCTTTAGAGACCTTGTCTTTGAACCTTGCTTTA 723
BSNT_05848___ 724 GTGCTGGGAACCGCCGGGCTTCCGCATATATTGATCCGGTTTTATACCGT 773
|||||.||.||.||.||..|.|||||.||.||||||||.||||||||.||
BPUM_3479___y 724 GTGCTTGGGACAGCAGGTTTGCCGCACATTTTGATCCGATTTTATACGGT 773
BSNT_05848___ 774 TAAGGATGCCAAGACGGCCCGTACATCCGTTGTGTCGGCGACATGGATTA 823
.||||||||||...|.||.||||.|||.|||.|.||.||.||.|||||.|
BPUM_3479___y 774 GAAGGATGCCATTTCTGCGCGTAAATCTGTTCTATCCGCTACGTGGATCA 823
BSNT_05848___ 824 TCGGTGTGTTTTACATTATGACGGTTTTTCTCGGCTTTGGTGCCGCGGCA 873
|||||.|.|||||..|.|||||||||||.||.|||||.|||||.||.||.
BPUM_3479___y 824 TCGGTATTTTTTATTTAATGACGGTTTTCCTTGGCTTCGGTGCAGCTGCC 873
BSNT_05848___ 874 TTTGTCGGTTTTGACGCGATTACAGCGGCTGATCAAGCGGGAAATATGGC 923
||.||.||....||||||||||||||.|..|||..|||.|||||||||||
BPUM_3479___y 874 TTCGTTGGAACAGACGCGATTACAGCAGAAGATGCAGCAGGAAATATGGC 923
BSNT_05848___ 924 GGCTCCGCTTTTAGCAAAAGCGCTCGGGGGAGACTTTCTG---TTCGCGT 970
.||.||.||..|.||..||||.||.||.||||| |||| ||.||.|
BPUM_3479___y 924 TGCCCCACTGCTCGCCCAAGCCCTTGGAGGAGA---TCTGTTATTTGCCT 970
BSNT_05848___ 971 TTGTATCAGCTATCGCCTTTGCCACCATTTTGGCTGTCGTGACAGGGTTG 1020
||||.||.|||||.||||||||.|||||||||||.|||||.||.||..|.
BPUM_3479___y 971 TTGTTTCCGCTATTGCCTTTGCGACCATTTTGGCGGTCGTAACTGGTCTC 1020
BSNT_05848___ 1021 GTGCTGTCTGCCGCCTCAGCATTTGCCCATGATATTTACAGCCAGATCAT 1070
||.||.|||||.||.||.||.|||||.||||||.||||.||.||||||.|
BPUM_3479___y 1021 GTCCTATCTGCTGCGTCTGCCTTTGCGCATGATTTTTATAGTCAGATCGT 1070
BSNT_05848___ 1071 CAGAAAGGGAGAAGCAACTGAAAAAGAACAAATGAAAGCGGCCAGATGGG 1120
|.|.|||||..||||.|.||||...|||||..||||.||.||..|.|..|
BPUM_3479___y 1071 CCGCAAGGGGAAAGCGAGTGAACGGGAACAGGTGAAGGCCGCACGCTTTG 1120
BSNT_05848___ 1121 CTTCTGTCGCCGTGTCAGTACTCTCGATTCTCCTTGCGATT-TTTGCACA 1169
|||||.|||.||||.|..|.||.||.|||.|.||||| ||| |||||.||
BPUM_3479___y 1121 CTTCTATCGGCGTGGCCATTCTTTCTATTATTCTTGC-ATTATTTGCCCA 1169
BSNT_05848___ 1170 ATCCTTAAATGTGGCGTTCCTTGTTGCACTCGCGTTTGCGGTAGCCGCCA 1219
|||.|||||.||.||.||||||||..||||.|||||.||.||.||.||.|
BPUM_3479___y 1170 ATCGTTAAACGTTGCTTTCCTTGTGTCACTTGCGTTCGCAGTGGCAGCAA 1219
BSNT_05848___ 1220 GCGCAAACCTTCCGCTGATTGTGTTTACAGTCTTCTGGAAACGATTCAAT 1269
|.|||||..|.||..|||||.|.||.||.|||||.|||||||||||.|||
BPUM_3479___y 1220 GTGCAAATTTACCATTGATTATCTTCACTGTCTTTTGGAAACGATTTAAT 1269
BSNT_05848___ 1270 GCCTCAGGCGCTCTATGG--GGCAGCCTGACAGGCCTGATCAGCGCGCTT 1317
.|..|.||.| |.||.| ||.|||.|...|||.|||.|.|||||.||.
BPUM_3479___y 1270 TCTACGGGTG--CCATTGCAGGGAGCTTAGTAGGTCTGTTGAGCGCACTG 1317
BSNT_05848___ 1318 GTGCTGGTATCGATGAGCCCTAGTGTGTGGGACCCGGCCGGAGGTGCTAT 1367
.|..|.||.|||.|.|||||.||.||.||||||||..|.||||..|||||
BPUM_3479___y 1318 ATCATCGTCTCGCTCAGCCCAAGCGTCTGGGACCCATCGGGAGCAGCTAT 1367
BSNT_05848___ 1368 TTTTACCGGTGATCCGCTCATTCCGCTGTCTAATCCAGGAATTATTTCCA 1417
.|||||.||.|||||||||||.||||||||.||.||.||.|||||.||.|
BPUM_3479___y 1368 CTTTACAGGAGATCCGCTCATACCGCTGTCAAACCCTGGCATTATCTCGA 1417
BSNT_05848___ 1418 TCCCGCTCGGCTTTCTCGGCGCGTGGCTCGGAACGATGCTGTCGTCTGAT 1467
||||||||||.||.||.|.|||.|...|.||.|||||..|.||.|||||.
BPUM_3479___y 1418 TCCCGCTCGGATTCCTTGCCGCATACTTAGGCACGATCTTCTCTTCTGAA 1467
BSNT_05848___ 1468 AAAACAATTGATGAAGATACGTTTGCAGAAATACAGGTGAAGGCGCATAC 1517
|||.|| ||||||||.||.|||.|.|||||.||.||.|||||.|||||
BPUM_3479___y 1468 AAAGCA---GATGAAGACACCTTTACGGAAATTCAAGTAAAGGCACATAC 1514
BSNT_05848___ 1518 TGGCGTCCATATGGA-ACAGGA---ATAA 1542
.||..|.|||||||| || .|| ||||
BPUM_3479___y 1515 AGGGATGCATATGGATAC-TGATTCATAA 1542
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