Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05864 and BPUM_3488
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:26
# Commandline: needle
# -asequence dna-align/BSNT_05864___ywbD.1.24716.seq
# -bsequence dna-align/BPUM_3488___ywbD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05864___ywbD-BPUM_3488___ywbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05864___ywbD-BPUM_3488___ywbD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05864___ywbD
# 2: BPUM_3488___ywbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1268
# Identity: 831/1268 (65.5%)
# Similarity: 831/1268 (65.5%)
# Gaps: 166/1268 (13.1%)
# Score: 2573.5
#
#
#=======================================
BSNT_05864___ 1 ATGAAGCTACTCACCCTAAAGAAAGCACACGCTGCCAAAATCAAAAAAGG 50
|||||...|.||.|..||||..||.||...||.|...||.||||||||||
BPUM_3488___y 1 ATGAAAAAAATCTCATTAAAACAAACATTTGCAGAACAACTCAAAAAAGG 50
BSNT_05864___ 51 CTATCCCCTTATCGAAAAAGAAGC--TCTCGC----AGGGAGTGCGGGGC 94
.|||||.||.||....|||||.|| |.|||| |.|.||||
BPUM_3488___y 51 ATATCCGCTCATTTCTAAAGATGCTGTATCGCATGTAAGCAGTG------ 94
BSNT_05864___ 95 ACATGAAAGAAGGAGACATCGTTGATAT-CGTGTCTGAGAGCGGCGAGTT 143
||||||||||.||..|..|||| || .|||..||||.|.||||..||
BPUM_3488___y 95 ---TGAAAGAAGGCGAACTGATTGA-ATGGGTGGATGAGCGAGGCGCCTT 140
BSNT_05864___ 144 TCTCGCGCGG----GGCTATTACGGCCTGCAAAATAAAGGGGTCGGCTGG 189
|.| .|| ||.|||||.||..||||||||||||||.||||||||
BPUM_3488___y 141 TTT----AGGAAAAGGATATTATGGTGTGCAAAATAAAGGGATCGGCTGG 186
BSNT_05864___ 190 ACGCTTAC--------CCGCAATAAACATGAACAGATTGACCAGGCATTT 231
...||||| || ||| |||.|.||.|||||.||.|||
BPUM_3488___y 187 GTACTTACTTTTGATGCC------AAC--GAAAAAATAGACCACGCCTTT 228
BSNT_05864___ 232 TTTCTCACCAA--ATTAACAAAAGCGGCCCAAGCG----------CGCGC 269
|||.||.|||| .|.|.|| ||| |||| |||
BPUM_3488___y 229 TTTGTCTCCAAGCTTGAGCA-----GGC---AGCGAAAAGTAGAACGC-- 268
BSNT_05864___ 270 CAAACTATT---TGAGGCTCAAGATACAACGGCTTTCCGCCTGTTTAACG 316
|..|||| |||.|| |.|.||.||.||||||||..||||.||||
BPUM_3488___y 269 --ATTTATTTCGTGATGC---ACAGACGACTGCTTTCCGTGTGTTCAACG 313
BSNT_05864___ 317 GTGAGGGCGACGGTGTCGGCGGCGTCACCATCGACTATTATGACGGCTAC 366
|.|||||.||.||..|.||.||..||||.||.||..||||||||||.|.|
BPUM_3488___y 314 GAGAGGGAGATGGAATTGGTGGATTCACGATTGATCATTATGACGGTTTC 363
BSNT_05864___ 367 CTGCTGGTACAATGGTACAGCAAGGGCATTTACACCTTTA------AAGA 410
...||..|.||.|||||.|||.|.||..|.||.||.||.| |||
BPUM_3488___y 364 TATCTCATCCAGTGGTATAGCGAAGGAGTGTATACATTCAAGGCGGAAG- 412
BSNT_05864___ 411 TA-----TGCTAATTTCCGCTTTGGATGAGATGGATCTTGATTATAAAGC 455
|| ||| |.||..|| ||| ||.|||..||.|||||||.
BPUM_3488___y 413 TATTGGGTGC--ACTTGAGC-----ATG---TGTATCCAGACTATAAAGG 452
BSNT_05864___ 456 GATTTACGAGAAAAAACGCTTCGACACAGCTGGACAATACGTTGAAGATG 505
.|||||.||.||.|||||.||.||.||..|.|||||.||..|.|||||||
BPUM_3488___y 453 CATTTATGAAAAGAAACGATTTGATACGTCGGGACAGTATATAGAAGATG 502
BSNT_05864___ 506 ATGACTTCGTGAAAGGGA-AAAGAGGCGAGTTCCCGATCATCATCCAGGA 554
||||.||.|| ||||||| |||.|||.||.||.||..|.|||.||.|.||
BPUM_3488___y 503 ATGATTTTGT-AAAGGGAGAAAAAGGTGAATTTCCTCTTATCGTCAAAGA 551
BSNT_05864___ 555 GAATGGCATTCA-ATACGCGGTGGATTTGAATGAAGGCGCCATGACGGGC 603
.|||||.||..| ||| |||||..|.||.|||||.||.||.|||||.||.
BPUM_3488___y 552 AAATGGTATGAACATA-GCGGTTTACTTAAATGATGGTGCGATGACAGGT 600
BSNT_05864___ 604 ATCTTTTTGGATCAGAGACATGTGCGCAAGGCGATCAGAGACCGCTATGC 653
||.|||.|.|||||..|.||||||.|.||.||.||..||||.||.|||||
BPUM_3488___y 601 ATTTTTCTTGATCAACGTCATGTGAGAAAAGCAATTCGAGATCGTTATGC 650
BSNT_05864___ 654 AAAAGGGAAAACCGTTTTAAATACATTTTCTTATACGGGTGCATTCTCCG 703
||||||.||.|||||..|.||||||||||||||.||.|||||.|||||.|
BPUM_3488___y 651 AAAAGGAAAGACCGTGCTCAATACATTTTCTTACACAGGTGCTTTCTCTG 700
BSNT_05864___ 704 TGGCAGCGGCGCTTGGCGGAGCGGAGAAA-----ACAACAAGCGTCGACG 748
|.|||||.||.|||||||||||| | ||.|||||.||.||.|
BPUM_3488___y 701 TAGCAGCAGCACTTGGCGGAGCG-----AGCCGGACGACAAGTGTAGATG 745
BSNT_05864___ 749 TGGCAAACCGAAGTCTGGCCAAAACGATC-GAGCAATTCAGCGTGAA--C 795
|.||||||||.|||.||...||||| ||| ||.||.|| |||| |
BPUM_3488___y 746 TCGCAAACCGCAGTTTGAAAAAAAC-ATCTGAACAGTT-----TGAAGTC 789
BSNT_05864___ 796 AAGCTG-----GATTACGAAGCGCACGACATTAAAGTGATGGACGTTTTT 840
|| || |||...||.|.|||.||.||||||||.||||||||.|||
BPUM_3488___y 790 AA--TGATATAGATGTGGATGGGCAGGATATTAAAGTTATGGACGTCTTT 837
BSNT_05864___ 841 AATTATTTTTCATATGCTG-AAAAAAAGGATTTGCGCTTTGATCTGATTA 889
||.||||||.|.|.||||| .||||||||| |.|..||.||||||..|.|
BPUM_3488___y 838 AAGTATTTTCCGTTTGCTGCGAAAAAAGGA-TGGACCTATGATCTTGTCA 886
BSNT_05864___ 890 TTCTCGATCCGCCTTCCTTTGCGCGCACAAAAAAACGCACCTTCAGCGCG 939
|..|.||.||||||||||||||.|||||.|||||||.|||.|||||.||.
BPUM_3488___y 887 TATTAGACCCGCCTTCCTTTGCACGCACGAAAAAACACACATTCAGTGCA 936
BSNT_05864___ 940 GCCAAGGATTATAAAAACCTGCTGAAGGAAACGATCGCCATCACTGCTGA 989
||.|||||.|||||.||.||..|.||.|||.|.|||...|||||.|||||
BPUM_3488___y 937 GCGAAGGACTATAAGAAGCTATTAAAAGAAGCCATCCAAATCACCGCTGA 986
BSNT_05864___ 990 CAAGGGTGTCATTGTTGCCTCTACAAACAGCAGCGCATTTGGCATGAAGA 1039
.||.||.||||||||.||.||.||.||.|||||.||||||||.|||||||
BPUM_3488___y 987 GAACGGCGTCATTGTGGCATCAACGAATAGCAGTGCATTTGGTATGAAGA 1036
BSNT_05864___ 1040 AATTCAAAGGCTTTATCGATGCCGCA----TTTAAAGAAACAAACGAACG 1085
||||||||||.|||||.| |||| |||||||||.||..|.||..
BPUM_3488___y 1037 AATTCAAAGGATTTATTG----CGCAGGCCTTTAAAGAATCAGGCCAAAC 1082
BSNT_05864___ 1086 CTACACCATCATTGAGGAATTTACGCTGCCGAAGGATTTC---------A 1126
|||....|||.||||.||||.|||.||.||..|||||||| |
BPUM_3488___y 1083 CTATCGTATCCTTGAAGAATATACACTTCCTGAGGATTTCCGTACGACGA 1132
BSNT_05864___ 1127 AAACGATTTCGGCATT-TCCGGAAGGCAACTACCTGAAAGTGGTCCTTC- 1174
||| ||| |||.|||||.||.||..|.||.||.|| ||||
BPUM_3488___y 1133 AAA----------ATTATCCTGAAGGAAATTATTTAAAGGTTGT-CTTCA 1171
BSNT_05864___ 1175 ----TGCAGAAAAAGTAA 1188
.|||.||
BPUM_3488___y 1172 TACAAGCATAA------- 1182
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