Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05930 and BPUM_3517
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:29
# Commandline: needle
# -asequence dna-align/BSNT_05930___cydC.1.24716.seq
# -bsequence dna-align/BPUM_3517___cydC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05930___cydC-BPUM_3517___cydC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05930___cydC-BPUM_3517___cydC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05930___cydC
# 2: BPUM_3517___cydC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1881
# Identity: 1146/1881 (60.9%)
# Similarity: 1146/1881 (60.9%)
# Gaps: 321/1881 (17.1%)
# Score: 3090.5
#
#
#=======================================
BSNT_05930___ 1 ATGGGAAAAGACCTGTTTCGATATAAAGGAATGAAG-CGGATTCTCACCT 49
||||..|||....||.|||.||..|||||||| ||| .||.||||..||.
BPUM_3517___c 1 ATGGATAAACGTTTGCTTCAATTAAAAGGAAT-AAGAGGGCTTCTTGCCC 49
BSNT_05930___ 50 TGATTA---CTTGTTTAACGCTGATTCAGACAGCCGCCATTATTATGCAG 96
| .||| .||||.| |.||.||.||...|||....||||||.|.||.
BPUM_3517___c 50 T-CTTAGGTATTGTGT--CACTCATCCAAGGAGCAAGTATTATTTTCCAA 96
BSNT_05930___ 97 GCAGAGTGGCTGAGTGAGGCCTTAAC--CGGACTGTTCAACGGGAAGGGC 144
|||.|.||||||....|.|||.|.|| || |||||..|||||||..||
BPUM_3517___c 97 GCACAATGGCTGGCACATGCCATTACTACG--CTGTTTGACGGGAAAAGC 144
BSNT_05930___ 145 ATT--------ACCTCCCTTTTTCCGGTGATCAGCTTTTTCCTCATCGCT 186
.|| |.|.||.|.|.|| |.|||.||||.|..| ||.
BPUM_3517___c 145 CTTTCGCAGGCAACGCCTTATGTC-------CTGCTGTTTCTTGCT-GCC 186
BSNT_05930___ 187 TTTATCGCCCGGCACGGGGTGACGGTGGCGCGACAGAAAATC--GTCTAT 234
|||.|.|..||||||||..|.||..||...||..||||..|| ||.||.
BPUM_3517___c 187 TTTCTGGTGCGGCACGGTCTCACCTTGATTCGGGAGAAGGTCATGTTTAC 236
BSNT_05930___ 235 CAATACGCCGCCCGGACAGGAGCAGATTTGAGGAAA-AGTTTTCTTGATC 283
| |||.|..||||.|..||||||||..|.||.||| ||.|.| |.||.|
BPUM_3517___c 237 C--TACTCTTCCCGAATTGGAGCAGACGTCAGAAAACAGCTGT-TAGACC 283
BSNT_05930___ 284 AGCTGTTCCGATTAGGCCCCCGCTTT-GCAAAGAAAGAAGGG-ACGGGGC 331
|.||.||.||.||||| |||.||||| .|||||||| ||||| ||.||
BPUM_3517___c 284 AACTCTTTCGTTTAGG-CCCAGCTTTCACAAAGAAA-AAGGGTACAGG-- 329
BSNT_05930___ 332 AAA--TGGTGACGCTGGCGATGGAAGGCA----TCA-----GCCAG--TT 368
||| |.||.||..|.||||||||.||.| ||| |.||| ||
BPUM_3517___c 330 AAAGCTTGTTACATTAGCGATGGAGGGAATTGCTCAATATCGTCAGTATT 379
BSNT_05930___ 369 CCGCCGCTACCTGGAGCTGTTTCTGCCGAAAATGGTCAGCATGGCGATTG 418
||| ||||||||.|.|||||||||||.|.|||||| |.||
BPUM_3517___c 380 -------TAC----AGCTGTTTTTACCGAAAATGGTGAACATGGC-AGTG 417
BSNT_05930___ 419 -TGCCTGCGGCA---GTTGTCATTTATGTGTTT-----TTTCAGGATCGG 459
|.| |||.| ||..||||.|| ||||| ||..|.|| .
BPUM_3517___c 418 ATAC---CGGTAATGGTCCTCATCTA--TGTTTGGACATTAGACGA---C 459
BSNT_05930___ 460 ACATCAGCCATCATTTTAGTCGCT---GCTATGCCGATTCTGATCATCTT 506
|||||.|||.||||||||.||| | |||| |||||..|.||.|||||
BPUM_3517___c 460 ACATCTGCCGTCATTTTAATCG-TGACGCTA--CCGATATTAATTATCTT 506
BSNT_05930___ 507 TATGATTCTTCTCGGCCTTGTCGCGCAGAGAAAAGCGG----ATCGTCAG 552
|||||||.|.||.||.||||||||.|||.|.||||||| | ||.
BPUM_3517___c 507 TATGATTTTGCTAGGTCTTGTCGCTCAGCGTAAAGCGGCCAAA----CAA 552
BSNT_05930___ 553 TGGAAATCCTATCAGAGACTTTCCAATCATTTTGTTGATTCTCTTCGCGG 602
||||.|||.|||.|||.|.|.||||||||||||..|||||||||.|||||
BPUM_3517___c 553 TGGAGATCGTATGAGAAATTATCCAATCATTTTACTGATTCTCTCCGCGG 602
BSNT_05930___ 603 GCTGGAGACATTGCGTTTCCTAGGTTTGAGCAAGTCACACAGCAAAAATA 652
.||.||.||..|.||||.|.||||..|.|||| |||||.|
BPUM_3517___c 603 CCTTGAAACGCTTCGTTACTTAGGCATTAGCA-----------AAAAACA 641
BSNT_05930___ 653 TTTTC----TAT---GTGAGTG----AGCGGTATCGCAAGGCAACGATGA 691
||.|| ||| |..|||| ||||.|||||.|||||.||.||||
BPUM_3517___c 642 TTCTCGCAATATCGGGGAAGTGTCAAAGCGATATCGAAAGGCGACCATGA 691
BSNT_05930___ 692 GCACACTCCGGGTAGCGTTTTTGTCATCATTCGCCCTCGATTTTTTCACG 741
|.||.||...|||.||.|||.|.||||||||.||.||.|||||.||..|.
BPUM_3517___c 692 GTACGCTGAAGGTCGCATTTCTTTCATCATTTGCGCTTGATTTCTTTTCC 741
BSNT_05930___ 742 ATGCTGTCGGTGGCGACAGTCGCAGTATTTCTGGGCCTGCGTCTCATTGA 791
|||||||||.|.||.||.|||||.||.|||||.|||.||||..|.|||||
BPUM_3517___c 742 ATGCTGTCGATTGCTACCGTCGCTGTCTTTCTTGGCTTGCGATTAATTGA 791
BSNT_05930___ 792 CGGCGATATTTTGCTTGGC------CCCGCTTTAACGGCGCTTATTCTGG 835
.||.|| ||||..| ||.|||||.||.|||||.||.||||
BPUM_3517___c 792 AGGAGA------GCTTCTCTTATTGCCGGCTTTGACAGCGCTCATGCTGG 835
BSNT_05930___ 836 CGCCTGAGTATTTTTTGCCGGTGCGGGAAGTGGGGAATGATTATCATGCA 885
|.||.||.||.|||.||||.||.||.||||||||.||||||||||||||.
BPUM_3517___c 836 CACCGGAATACTTTCTGCCAGTACGTGAAGTGGGAAATGATTATCATGCC 885
BSNT_05930___ 886 ACGCTGAACGGCCAGGAAGCAGGAAAAACCATTCAAGAGATTTTGTCGCA 935
|||||.||.||..|.||||| ||| |.|||.||| |||
BPUM_3517___c 886 ACGCTAAATGGAAAAGAAGC--GAA-------TGAAGCGAT------GCA 920
BSNT_05930___ 936 GCCTGGTTTTA-AAGAAGAGACGCCGCTTCAGCTCG-AGGATTGGTC-CG 982
| .|..||||| |||||.|| .|||||.||.|| |||| |.| |.
BPUM_3517___c 921 G-GTCATTTTAGAAGAAAAG----GGCTTCCGCACGCAGGA---GACACA 962
BSNT_05930___ 983 ATCAGGATG-AGCTGAAGCTGTCAGGCGTGT--------CAGTCGGCCGT 1023
||||| || |..|||| ||.|| |||||.||..|
BPUM_3517___c 963 ATCAG--TGCAATTGAA---------CGAGTGGAATGAACAGTCTGCACT 1001
BSNT_05930___ 1024 --------------TCGGTGTC-----TGA-------------TATTC-- 1039
|..||||| ||| |||||
BPUM_3517___c 1002 CACCCTGCATGATGTGAGTGTCCAGCATGACGAACATGCCCCTTATTCAA 1051
BSNT_05930___ 1040 ------------ATCTCTCATTCAAAGGCAAGAAAAAAATCGGCATTATC 1077
||||..|..|||||||.|||||.||||||||.||.||.
BPUM_3517___c 1052 TTCAGGATGTAGATCTTACTGTCAAAGGGAAGAAGAAAATCGGAATCATT 1101
BSNT_05930___ 1078 GGTGCAAGCGGCGCCGGAAAATCAACATTAATTGATATTCTCGGCGGATT 1127
|||||.||.||..|.||.|||||.||.||||..|||.|.||||||||.||
BPUM_3517___c 1102 GGTGCCAGTGGTTCAGGGAAATCGACGTTAACCGATGTGCTCGGCGGCTT 1151
BSNT_05930___ 1128 TTTAGAGCCGGATGGCGGGATGA-TTGAGGT-TAATGGTACAAGCCGG-- 1173
|.|.||.|| || .|.|||| .|||...||.|..|||
BPUM_3517___c 1152 TGTTGAACC------------GACCTCAGGTCAAATCACACTAAACGGCA 1189
BSNT_05930___ 1174 -TCC-------CATTTGCAG--GACGGCAGCTGGCAGAA--AAACCTTCT 1211
||| |||||.||| ||.||.| |||||.|| ||..|.||
BPUM_3517___c 1190 ATCCACTTGTGCATTTACAGATGAAGGAA--TGGCAAAAGGAAGTCGTC- 1236
BSNT_05930___ 1212 GTACATCCCTCAGCATCCGTACATTTTTGATGATACGCTTGGCA------ 1255
||.||.||.|||||.||.||..|.||| |.|.||.||
BPUM_3517___c 1237 -TATATGCCGCAGCACCCTTATTTATTT-------CACATGACATTAAGA 1278
BSNT_05930___ 1256 -ATAACATTCGCTTCTA-CCACCCAAGCGCTTCGGCAGA---------GG 1294
|.||||||||.||.|| ..|||.|| |.|..|||| ||
BPUM_3517___c 1279 GAAAACATTCGTTTTTATGAACCGAA----TGCAACAGATGAAGAAGTGG 1324
BSNT_05930___ 1295 ATACAGCCCGTGCTGCTGCGGCG--GCGGGACTGGCGGAGCTGGTGGATA 1342
|.|.| ||||| |.|.| |||||..|..|..||||.|||| .
BPUM_3517___c 1325 AAATA------GCTGC--CAGTGAAGCGGGCTTATCTCAGCTCGTGG--C 1364
BSNT_05930___ 1343 GC--CTTCCTGAAGGATTAGAGGGGCGGATCGGGGAAGGCGGCCGGGCGC 1390
|| ||.||..|.||.||.||.|.|...||.||.|||...||..|.|..|
BPUM_3517___c 1365 GCAGCTACCAAATGGCTTTGATGAGGTCATTGGAGAACAAGGAAGAGGAC 1414
BSNT_05930___ 1391 TCAGCGGCGGCCAGGCACAGCGTGTCGCGCTGGCCCGCGCCTTTTTGGG- 1439
|.||||||||.||||||||..|..|.|||||.||.||..|..|..||||
BPUM_3517___c 1415 TAAGCGGCGGACAGGCACAAAGAATTGCGCTTGCGCGAACGGTGCTGGGC 1464
BSNT_05930___ 1440 AAACCGTCCGATCCTGCTGCTGGATGAGCCGACCGCCCATCTTGATATCG 1489
||.|.|||| ||..|||||.|.|||||.||.||.||.|||||.|||||.|
BPUM_3517___c 1465 AAGCGGTCC-ATTATGCTGTTAGATGAACCAACGGCACATCTCGATATTG 1513
BSNT_05930___ 1490 AAACTGAATATGAAATAAAAGAAACGATGCTGGATTTATTTGAGGATAAG 1539
|.||.|||||||||.|.||..||||.|||||....||.|||||.|||||.
BPUM_3517___c 1514 AGACAGAATATGAATTGAAGAAAACAATGCTTCCGTTGTTTGAAGATAAA 1563
BSNT_05930___ 1540 CTCGTTTTTCTCGCGACTCACCGCCTTCACTGGATGCTCGATATGGACGA 1589
||.||.||..|.|||||.||..|.||.||.|||||||..||||||.|.||
BPUM_3517___c 1564 CTTGTGTTCTTAGCGACACATAGGCTCCATTGGATGCCAGATATGAATGA 1613
BSNT_05930___ 1590 AATTATCGTGCTGGACGGGGGCAGGGTTGCGGAAGTCGGGACTCACAATG 1639
.||.||.||..||||.|..||.|...||||||||.|.||.||.| |||
BPUM_3517___c 1614 GATCATTGTCATGGATGAAGGAACAATTGCGGAAATGGGTACAC---ATG 1660
BSNT_05930___ 1640 A---ACTGCTGGAGAAAAACGGTGTGTA-TACCAAACTCGTGAAGGCACA 1685
| |.|..||.|.|.|||.||.||||| ||.| ||.|.||..|||..||
BPUM_3517___c 1661 AATCATTAATGCAAAGAAAAGGCGTGTATTATC-AATTGGTACAGGAGCA 1709
BSNT_05930___ 1686 ACTGGGGG-----AAAGAGCATGA------- 1704
|.|||||| |.| ||||.
BPUM_3517___c 1710 AATGGGGGCGGTCACA---CATGGTAAGTAA 1737
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