Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05930 and BPUM_3517

See DNA alignment / Visit BSNT_05930 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:29
# Commandline: needle
#    -asequence pep-align/BSNT_05930___cydC.1.24716.seq
#    -bsequence pep-align/BPUM_3517___cydC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05930___cydC-BPUM_3517___cydC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05930___cydC-BPUM_3517___cydC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05930___cydC
# 2: BPUM_3517___cydC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 578
# Identity:     364/578 (63.0%)
# Similarity:   460/578 (79.6%)
# Gaps:          11/578 ( 1.9%)
# Score: 1888.0
# 
#
#=======================================

BSNT_05930___      1 MGKDLFRYKGMKRILTLITCLTLIQTAAIIMQAEWLSEALTGLFNGKGIT     50
                     |.|.|.:.||::.:|.|:..::|||.|:||.||:||:.|:|.||:||.::
BPUM_3517___c      1 MDKRLLQLKGIRGLLALLGIVSLIQGASIIFQAQWLAHAITTLFDGKSLS     50

BSNT_05930___     51 SLFPVISFFLIAFIARHGVTVARQKIVYQYAARTGADLRKSFLDQLFRLG    100
                     ...|.:..||.||:.|||:|:.|:|:::.|::|.|||:||..||||||||
BPUM_3517___c     51 QATPYVLLFLAAFLVRHGLTLIREKVMFTYSSRIGADVRKQLLDQLFRLG    100

BSNT_05930___    101 PRFAKKEGTGQMVTLAMEGISQFRRYLELFLPKMVSMAIVPAAVVIYVFF    150
                     |.|.||:|||::||||||||:|:|:||:|||||||:||::|..|:|||:.
BPUM_3517___c    101 PAFTKKKGTGKLVTLAMEGIAQYRQYLQLFLPKMVNMAVIPVMVLIYVWT    150

BSNT_05930___    151 QDRTSAIILVAAMPILIIFMILLGLVAQRKADRQWKSYQRLSNHFVDSLR    200
                     .|.|||:||:..:||||||||||||||||||.:||:||::|||||.||||
BPUM_3517___c    151 LDDTSAVILIVTLPILIIFMILLGLVAQRKAAKQWRSYEKLSNHFTDSLR    200

BSNT_05930___    201 GLETLRFLGLSKSHSKNIFYVSERYRKATMSTLRVAFLSSFALDFFTMLS    250
                     ||||||:||:||.||:||..||:||||||||||:||||||||||||:|||
BPUM_3517___c    201 GLETLRYLGISKKHSRNIGEVSKRYRKATMSTLKVAFLSSFALDFFSMLS    250

BSNT_05930___    251 VATVAVFLGLRLIDGDILLGPALTALILAPEYFLPVREVGNDYHATLNGQ    300
                     :||||||||||||:|::||.||||||:||||||||||||||||||||||:
BPUM_3517___c    251 IATVAVFLGLRLIEGELLLLPALTALMLAPEYFLPVREVGNDYHATLNGK    300

BSNT_05930___    301 EAGKTIQEILSQPGFK--EETPLQLEDWSDQDELKLSGVSVGR------S    342
                     ||.:.:|.||.:.||:  |...:||.:|::|..|.|..|||..      |
BPUM_3517___c    301 EANEAMQVILEEKGFRTQETQSVQLNEWNEQSALTLHDVSVQHDEHAPYS    350

BSNT_05930___    343 VSDIHLSFKGKKKIGIIGASGAGKSTLIDILGGFLEPDGGMIEVNGTSRS    392
                     :.|:.|:.|||||||||||||:|||||.|:||||:||..|.|.:||....
BPUM_3517___c    351 IQDVDLTVKGKKKIGIIGASGSGKSTLTDVLGGFVEPTSGQITLNGNPLV    400

BSNT_05930___    393 HLQDGSWQKNLLYIPQHPYIFDDTLGNNIRFYHPSASAEDTARAAAAAGL    442
                     |||...|||.::|:|||||:|..||..|||||.|:|:.|:...||:.|||
BPUM_3517___c    401 HLQMKEWQKEVVYMPQHPYLFHMTLRENIRFYEPNATDEEVEIAASEAGL    450

BSNT_05930___    443 AELVDSLPEGLEGRIGEGGRALSGGQAQRVALARAFLGNRPILLLDEPTA    492
                     ::||..||.|.:..|||.||.||||||||:||||..||.|.|:|||||||
BPUM_3517___c    451 SQLVAQLPNGFDEVIGEQGRGLSGGQAQRIALARTVLGKRSIMLLDEPTA    500

BSNT_05930___    493 HLDIETEYEIKETMLDLFEDKLVFLATHRLHWMLDMDEIIVLDGGRVAEV    542
                     |||||||||:|:|||.|||||||||||||||||.||:||||:|.|.:||:
BPUM_3517___c    501 HLDIETEYELKKTMLPLFEDKLVFLATHRLHWMPDMNEIIVMDEGTIAEM    550

BSNT_05930___    543 GTHNELLEKNGVYTKLVKAQLGERA---    567
                     |||..|:::.|||.:||:.|:|...   
BPUM_3517___c    551 GTHESLMQRKGVYYQLVQEQMGAVTHGK    578


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