Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05932 and BPUM_3519
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:30
# Commandline: needle
# -asequence dna-align/BSNT_05932___cydA.1.24716.seq
# -bsequence dna-align/BPUM_3519___cydA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05932___cydA-BPUM_3519___cydA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05932___cydA-BPUM_3519___cydA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05932___cydA
# 2: BPUM_3519___cydA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1464
# Identity: 1054/1464 (72.0%)
# Similarity: 1054/1464 (72.0%)
# Gaps: 105/1464 ( 7.2%)
# Score: 3657.0
#
#
#=======================================
BSNT_05932___ 1 ATGAGTGAATTGGTATTAGCCCGCATACAATTTGCATCAACAACGTTGTT 50
.|||||||..||.|.|||||..|..|.||||||||.|||||.||.||.||
BPUM_3519___c 1 GTGAGTGAGCTGTTTTTAGCAAGATTTCAATTTGCTTCAACGACATTATT 50
BSNT_05932___ 51 TCACTTCTTGTTTGTGCCGATGTCTATCGGGCTTGTGTTTATGGTTGCGT 100
|||.||..|.|||||.||.|||||.||.||..|.||||||||.|||||.|
BPUM_3519___c 51 TCATTTTATTTTTGTTCCTATGTCAATAGGTTTGGTGTTTATCGTTGCAT 100
BSNT_05932___ 101 TGATGGAGACTCTTTATCTTGTAAAGAAAAATGAGCTGTATCTCAAAATG 150
|||||.||||.||||||.|.||.||||||||.|||.|.|||...||||||
BPUM_3519___c 101 TGATGCAGACCCTTTATGTCGTCAAGAAAAAAGAGATTTATAAAAAAATG 150
BSNT_05932___ 151 GCAAAGTTTTGGGGACACTTATTCTTAATAAATTTCGCAGTCGGTGTTGT 200
||.|||||||||||.||..|||||.||.|.|||||.|||||.|||||.||
BPUM_3519___c 151 GCGAAGTTTTGGGGTCATCTATTCCTACTCAATTTTGCAGTAGGTGTGGT 200
BSNT_05932___ 201 AACGGGGATTTTGCAAGAATTCCAGTTTGGACTGAACTGGTCTGATTACT 250
.||.||||||.|.||.||||||||||||||..||||||||||.|||||.|
BPUM_3519___c 201 GACAGGGATTCTCCAGGAATTCCAGTTTGGGATGAACTGGTCAGATTATT 250
BSNT_05932___ 251 CCCGTTTTGTCGGAGATGTATTTGGCGCTCCCCTTGCGATTGAAGCATTA 300
|..|.||||||||.|||||||||||.||.||.|||||.|||||||||.|.
BPUM_3519___c 251 CAAGGTTTGTCGGTGATGTATTTGGTGCACCGCTTGCCATTGAAGCACTG 300
BSNT_05932___ 301 TTGGCGTTTTTCATGGAATCTATTTTTATCGGATTATGGATTTTTGGCTG 350
.|.||.||||||.|.|||||||..|||||.|||.|.|||||.||.|||||
BPUM_3519___c 301 CTCGCCTTTTTCCTTGAATCTACATTTATTGGACTTTGGATATTCGGCTG 350
BSNT_05932___ 351 GGACCGCCTGCCGAAGAAAATTCACGCTCTCTGCATATGGCTCGTATCAT 400
|||.|||.||||||||||.|||||.....|.||.||.|||||.||.|||.
BPUM_3519___c 351 GGATCGCTTGCCGAAGAAGATTCATTTATTGTGTATTTGGCTTGTTTCAA 400
BSNT_05932___ 401 TCGGAACGATCATGTCATCTTTCTGGATTTTAACAGCAAACTCCTTTATG 450
|.||.|||||..|.||..|.||.|||||||||...||.|||||.||||||
BPUM_3519___c 401 TTGGTACGATTTTTTCCGCGTTTTGGATTTTACTCGCCAACTCATTTATG 450
BSNT_05932___ 451 CAGGAGCCGGTCGGTTTTACGATCAAAAACGGCCGCGCGGAAATGAATGA 500
||.|||||.||.||.|||...||.|||||.|||||.||.||.||||||||
BPUM_3519___c 451 CAAGAGCCAGTTGGATTTGTCATTAAAAATGGCCGTGCAGAGATGAATGA 500
BSNT_05932___ 501 TTTTGGCGC-GTTGATTACAAACCCTCAGCTTTGGGTTGAATTCCCGCAC 549
||||||||| .||| |.||.|||||.||||||||||||||||||||||||
BPUM_3519___c 501 TTTTGGCGCTCTTG-TAACGAACCCGCAGCTTTGGGTTGAATTCCCGCAC 549
BSNT_05932___ 550 GTTATTTTCGGTGCGCTTGCCACTGGAGCTTTCTTTATTGCCGGAGTGAG 599
|||.|.||.||||||||.||.||.||.||.|||||||||||.|||||.||
BPUM_3519___c 550 GTTCTGTTTGGTGCGCTGGCTACAGGTGCATTCTTTATTGCAGGAGTTAG 599
BSNT_05932___ 600 TGCTTTTAAACTGCTGAAGAAAAAAGAAGT-GCCGTTCTTTAAGCAATCT 648
|||.|.||||.||.|.||.|||.|||||.| ||| ||.||.||..||||.
BPUM_3519___c 600 TGCCTATAAAATGATCAAAAAACAAGAAATCGCC-TTTTTCAAAAAATCA 648
BSNT_05932___ 649 TTTAAACTCGCAATGATCGTCGGCCTTT--GTGCCGGTCTT-GGCGTCGG 695
|||.|..|.||.|||.|..||| |||| .|.|.|| ||| ||.|| ||
BPUM_3519___c 649 TTTCAGATTGCGATGGTTCTCG--CTTTAATTTCTGG-CTTAGGTGT-GG 694
BSNT_05932___ 696 CCTTAGC-GGACACATG--CAGGCTGAGCACTTGATGGAATCACAGCCGA 742
|.||..| || ||||| ||.||..|||||||.||||||||||||||||
BPUM_3519___c 695 CGTTCTCTGG--ACATGATCAAGCGAAGCACTTAATGGAATCACAGCCGA 742
BSNT_05932___ 743 TGAAAATGGCTGCCAGTGAAGGTCTATGGGAAGACAGCGGTGACCCTGCT 792
||||.|||||.||.|||||||..||.|||.|.||.||.||.||.||.||.
BPUM_3519___c 743 TGAAGATGGCAGCAAGTGAAGCCCTTTGGAAGGATAGTGGAGATCCAGCG 792
BSNT_05932___ 793 GCTTGGACCGCT-TTTGCGACGATCGATACA---AAAAATGAAAAAAGCT 838
||||||| |.|| |||||.|..||.|||||| |||||.||||| ||
BPUM_3519___c 793 GCTTGGA-CACTATTTGCCAACATTGATACAGATAAAAAAGAAAA---CT 838
BSNT_05932___ 839 CAAATGAAATCAAAGTTCCTTATGCCTTGAGCTACTTGGCTTATCAGAAA 888
|....||.|||||..||||.|.|||.||.||.||||||||||||..||||
BPUM_3519___c 839 CTGCGGAGATCAATATTCCGTTTGCTTTAAGTTACTTGGCTTATTCGAAA 888
BSNT_05932___ 889 TTCAGCGGAAGTGTCAAAGGGATGAAAACCCTTCAGGCTGAGTACGAAAA 938
||.||.|||..|||...|||.|||....||||||| ||||
BPUM_3519___c 889 TTTAGTGGAGATGTGCCAGGCATGCTGTCCCTTCA-----------AAAA 927
BSNT_05932___ 939 -AATATACGGAA---AA----------GGCGACTACATTCCGCCAGTGAA 974
||||| ||| || ||.|||||||||||||||||.||
BPUM_3519___c 928 GAATAT---GAAGCGAAGTTTGGCCCTGGAGACTACATTCCGCCAGTAAA 974
BSNT_05932___ 975 AACGACATTCTGGAGCTTCCGCATCATGGTAGGAGCAGG--TGTTGTCAT 1022
|||.||.|||||||||||..|.||||||||.||.||.|| ||.|| ||
BPUM_3519___c 975 AACAACCTTCTGGAGCTTTAGAATCATGGTTGGTGCCGGCATGCTG--AT 1022
BSNT_05932___ 1023 GATTCTTGCTGCGTTAGG--CGGCCTTTGGTTAAACCGCCGCAAAAAGCT 1070
||||.|||| |..||.| .|||.|.|..||||.|....|.|||||.||
BPUM_3519___c 1023 GATTTTTGC--CAGTATGATTGGCTTGTACTTAAGCTTTAGAAAAAAACT 1070
BSNT_05932___ 1071 TGAAAACAGCAAATGGTATTTGCGCATCATGATCGCGTTGATTTCCTTCC 1120
.||||..|.||||||||.|||.|||.|||||.|.|.|.|||||.|.||||
BPUM_3519___c 1071 CGAAACGAACAAATGGTTTTTACGCTTCATGGTAGGGATGATTGCATTCC 1120
BSNT_05932___ 1121 CGTTTCTTGCGAACTCCGCGGGCTGGATTATGACAGAAATCGGACGTCAG 1170
||||..||||||||||.||.||||||||.|||||.||||||||.||||||
BPUM_3519___c 1121 CGTTCATTGCGAACTCAGCTGGCTGGATCATGACCGAAATCGGGCGTCAG 1170
BSNT_05932___ 1171 CCTTGGACGGTTATGGGGTTAATGACAACCGCTCAATCTGTGTCACCTAA 1220
||.||||||||..|.|||.|.|||||.||.||||||||..|.|||||.||
BPUM_3519___c 1171 CCGTGGACGGTCTTTGGGATGATGACGACGGCTCAATCGATTTCACCAAA 1220
BSNT_05932___ 1221 CGTA----ACAGCGGGCTCCTTGTTATTCTCAATCATCGCATTCGGTGT- 1265
|||| ||.||..|| |||||||||||.| ||||.|.|.|
BPUM_3519___c 1221 CGTATCGTACGGCATGC----TGTTATTCTCAGT-----CATTAGCTTTA 1261
BSNT_05932___ 1266 ----GATGTACATGATTCTTGGTGCA--CTGCTTGTCTTCTTGTTTATCC 1309
|||.||..||||||||| .|| .||||||.||.|.|.||.||.|
BPUM_3519___c 1262 CGACGATTTATCTGATTCTTG--CCATCTTGCTTGCCTACCTATTCATTC 1309
BSNT_05932___ 1310 GTGAGATTAAAAAAGGTGC---------GGAGCATAGTGATCATCATGAT 1350
||||.|||||||||||||| .|||.|||..|||||..|.|||
BPUM_3519___c 1310 GTGAAATTAAAAAAGGTGCACATTCGGAAGAGGATACAGATCAAAAGGAT 1359
BSNT_05932___ 1351 -----GTTCCTGTATCAACAGATCCATTTAGTCAGGAG--GTATACCATG 1393
|..|||| ||.||||||||||||..| |||| |.|||.||||
BPUM_3519___c 1360 GAAACGGACCTG--TCTACAGATCCATTTGAT--GGAGGCGCATATCATG 1405
BSNT_05932___ 1394 GCATCTCTTCATGA 1407
||||.||||.|
BPUM_3519___c 1406 GCATATCTTAA--- 1416
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