Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05940 and BPUM_3535
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:30
# Commandline: needle
# -asequence dna-align/BSNT_05940___yxkH.1.24716.seq
# -bsequence dna-align/BPUM_3535___yxkH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05940___yxkH-BPUM_3535___yxkH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05940___yxkH-BPUM_3535___yxkH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05940___yxkH
# 2: BPUM_3535___yxkH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 932
# Identity: 584/932 (62.7%)
# Similarity: 584/932 (62.7%)
# Gaps: 163/932 (17.5%)
# Score: 1633.0
#
#
#=======================================
BSNT_05940___ 1 ATGAAACGATTGTTTTTAAGCATCTTTCTT-TTGGGCAGCTGTTTGGCTC 49
|||||| .||.|||.|.|.|| .|| .|.|||.|.||.
BPUM_3535___y 1 ATGAAA----------AAAACATGTATGTTGATG----ACGGTTGGTCTT 36
BSNT_05940___ 50 TTGCGGCTTGCGCTGATCA--AGAGGC-GAATG----CAGAGCAGCCGAT 92
||| ||||||.||| ..|||| |.||| |..||.|||
BPUM_3535___y 37 TTG------GCGCTGCTCATTTCAGGCTGTATGGGAACGAAGGAGC---- 76
BSNT_05940___ 93 GCCAAAAGCGGAACAAAAGAAACCGGAA--------------AAAAAGG- 127
||.||| ||.||||||.|.| |||||||
BPUM_3535___y 77 -----AAACGG----AAGGAAACCAGCAAGTGGTCAAAGAGGAAAAAGGT 117
BSNT_05940___ 128 -CAGTACAAGTTCAGA-AAAAAGAAGACGATACA----TCCGCATGGAT- 170
||.||||| ||.|.| |||.|||||| |||.|| ||.|.|..|||
BPUM_3535___y 118 CCATTACAA-TTAAAAGAAACAGAAGA-GATTCAGCAGTCAGAAGCGATA 165
BSNT_05940___ 171 ------------CAAAAC-----------AGAGAAACCGGCAAAGCTGCC 197
|||||| |.||.|.||||.|.||||.||
BPUM_3535___y 166 GAGGTTGATACACAAAACTGGATTGAGCAAAAGGAGCCGGTAGAGCTTCC 215
BSNT_05940___ 198 GATTTTGATGTACCACAGCATTTCTTCA--GGAAACAGCCTCCGTGTGCC 245
||||||||||||.||||||| |||.|| ||.|||...||.|||||.||
BPUM_3535___y 216 GATTTTGATGTATCACAGCA--TCTCCAGTGGTAACTCGCTGCGTGTACC 263
BSNT_05940___ 246 AAAGAAAGAATTCGAGGCGCATATGAAGTGGCTTCATGATAACGGCTATC 295
|||||..||.||.|.|||.||||||||.|||||..|.||.||||.||||.
BPUM_3535___y 264 AAAGAGCGAGTTTGCGGCTCATATGAAATGGCTGAAGGACAACGACTATG 313
BSNT_05940___ 296 AGACATTAACGCCGAAAGAGGCATATCTCATGCTGAC-GCAGGATAAAAA 344
..|||.|..||||..||||.||.||.|.|||..|.|| .|| .|||..||
BPUM_3535___y 314 TCACACTGTCGCCAGAAGAAGCGTACCGCATCTTCACAACA-AATACGAA 362
BSNT_05940___ 345 ACCGAGTGAGAAGTGCGTGCTGATCACATTTGATGACGGGTACACCGACA 394
.||.|||||||||||.||.||.||.|||||.|||||.||.||.|||||.|
BPUM_3535___y 363 GCCAAGTGAGAAGTGTGTCCTCATTACATTCGATGATGGATATACCGATA 412
BSNT_05940___ 395 ATTAT-CAAGATGCGTATCCGGTGCTGAAAAAGTACGGGATGAAGGCAAC 443
|.||| ||| |.||.|.||||.|..|.||..||||.||.|||||||||||
BPUM_3535___y 413 ACTATACAA-AGGCATTTCCGATTTTAAAGCAGTATGGAATGAAGGCAAC 461
BSNT_05940___ 444 GATTTTTATGATCG-GCAAATCGATCGGACATAGGCACCATCTGACAGAG 492
||||||||||||.| || ||||.|||||.|.|..|.||||..|.|||||.
BPUM_3535___y 462 GATTTTTATGATTGAGC-AATCCATCGGCCGTCCGAACCACTTAACAGAT 510
BSNT_05940___ 493 GACCAAATGAAGGAAATG---GCACA-GCACGGCATATCGATTGAAAGCC 538
||.||||||.|.|||||| |||.| | ||| ||||.|||||.||.|
BPUM_3535___y 511 GAACAAATGGATGAAATGATCGCAAATG---GGC-TATCAATTGAGAGTC 556
BSNT_05940___ 539 ATACGATTGACCACGTTGAGCTGAACGGATTAACGCCTCAACAGCAGCAA 588
|.||.|.|.|.||..|.|||||.||..|.||| |||| ||.|||||
BPUM_3535___y 557 ACACCAGTCATCATTTAGAGCTCAATCGTTTA-----TCAA-AGGAGCAA 600
BSNT_05940___ 589 -AGCGAGATGGCTGATTCGAA-----AAAG---CTGTTCGA-CCACATGT 628
||..|||.| .|||..|| |||| .|.||.|| |.||.|.|
BPUM_3535___y 601 CAGAAAGAGG---AATTAAAAGGGTCAAAGGCATTCTTTGATCAACGTTT 647
BSNT_05940___ 629 TTCATCAGCAAACCACCATCATCAGCTATCCGGTAGGGCGCTACAATGAG 678
||| |||||..||.|..||..|.||||||||.||.||||||||.||.||.
BPUM_3535___y 648 TTC-TCAGCGTACGAGAATGGTGAGCTATCCTGTCGGGCGCTATAACGAA 696
BSNT_05940___ 679 GAGACGCTGAAGGCCGCTG----AAAAAACAGGCTATCAAATGGGCGTGA 724
||.|||||||| |||| ||.||.||||.||||||||||..||.|
BPUM_3535___y 697 GACACGCTGAA----GCTGGCGAAAGAAGCAGGTTATCAAATGGCTGTCA 742
BSNT_05940___ 725 CGACAGAACCGGG---CGCGGCTTCGAGA--GACCAGGGAATGTATG-CC 768
|.||.|||||.|| .||| .||| ||.|||||.||| ||| ||
BPUM_3535___y 743 CCACTGAACCTGGACATGCG-----AAGAAGGAACAGGGCATG-ATGTCC 786
BSNT_05940___ 769 CTCCATCGTGTGCGCGTGTCCCCAGGCATGTCGGGCTCG---GCTTT--- 812
.|.||.||||||||||||||.||.||..|.|| .|.|| |||||
BPUM_3535___y 787 TTGCACCGTGTGCGCGTGTCACCGGGACTTTC--ACCCGAAAGCTTTGGC 834
BSNT_05940___ 813 ----TGGTGCGTACATCGAATCAATGAAATAA 840
|||| .|.|..||||.||.| ||||
BPUM_3535___y 835 AGGCTGGT---AAAAGGGAATGAACG--ATAA 861
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