Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05940 and BPUM_3535

See DNA alignment / Visit BSNT_05940 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:30
# Commandline: needle
#    -asequence pep-align/BSNT_05940___yxkH.1.24716.seq
#    -bsequence pep-align/BPUM_3535___yxkH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05940___yxkH-BPUM_3535___yxkH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05940___yxkH-BPUM_3535___yxkH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05940___yxkH
# 2: BPUM_3535___yxkH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 288
# Identity:     159/288 (55.2%)
# Similarity:   208/288 (72.2%)
# Gaps:          11/288 ( 3.8%)
# Score: 814.0
# 
#
#=======================================

BSNT_05940___      1 MKR--LFLSIFLLGSCLALAAC--ADQEANAEQPMPKAE----QKKPEKK     42
                     ||:  :.:::.||  .|.::.|  ..::....|.:.|.|    |.|..::
BPUM_3535___y      1 MKKTCMLMTVGLL--ALLISGCMGTKEQTEGNQQVVKEEKGPLQLKETEE     48

BSNT_05940___     43 AVQVQKKEDDTSAWIKTEKPAKLPILMYHSISSGNSLRVPKKEFEAHMKW     92
                     ..|.:..|.||..||:.::|.:|||||||||||||||||||.||.|||||
BPUM_3535___y     49 IQQSEAIEVDTQNWIEQKEPVELPILMYHSISSGNSLRVPKSEFAAHMKW     98

BSNT_05940___     93 LHDNGYQTLTPKEAYLMLTQDKKPSEKCVLITFDDGYTDNYQDAYPVLKK    142
                     |.||.|.||:|:|||.:.|.:.|||||||||||||||||||..|:|:||:
BPUM_3535___y     99 LKDNDYVTLSPEEAYRIFTTNTKPSEKCVLITFDDGYTDNYTKAFPILKQ    148

BSNT_05940___    143 YGMKATIFMIGKSIGHRHHLTEDQMKEMAQHGISIESHTIDHVELNGLTP    192
                     ||||||||||.:|||..:|||::||.||..:|:||||||..|:|||.|:.
BPUM_3535___y    149 YGMKATIFMIEQSIGRPNHLTDEQMDEMIANGLSIESHTSHHLELNRLSK    198

BSNT_05940___    193 QQQQSEMADSKKLFDHMFHQQTTIISYPVGRYNEETLKAAEKTGYQMGVT    242
                     :||:.|:..||..||..|.|:|.::|||||||||:|||.|::.||||.||
BPUM_3535___y    199 EQQKEELKGSKAFFDQRFSQRTRMVSYPVGRYNEDTLKLAKEAGYQMAVT    248

BSNT_05940___    243 TEPGAASRDQGMYALHRVRVSPGMSGSAFGAYIESMK-    279
                     ||||.|.::|||.:|||||||||:|..:||..::..: 
BPUM_3535___y    249 TEPGHAKKEQGMMSLHRVRVSPGLSPESFGRLVKGNER    286


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.