Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05527 and BPUM_3569
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_05527.1.24716.seq
# -bsequence dna-align/BPUM_3569___ywqG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05527-BPUM_3569___ywqG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05527-BPUM_3569___ywqG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05527
# 2: BPUM_3569___ywqG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 886
# Identity: 312/886 (35.2%)
# Similarity: 312/886 (35.2%)
# Gaps: 494/886 (55.8%)
# Score: 838.5
#
#
#=======================================
BSNT_05527 0 -------------------------------------------------- 0
BPUM_3569___y 1 GTGACACAATCAGCGAAGCTGCAAGAAATCATAGCACCTTATCGTAAAAT 50
BSNT_05527 0 -------------------------------------------------- 0
BPUM_3569___y 51 GTTAGATCAAACGGAACAGCCAATGATTCAACTACAGATGAAACAAGGAA 100
BSNT_05527 0 -------------------------------------------------- 0
BPUM_3569___y 101 AAACAGGACCTTACGACAGCAAAATTGCAGGTGATCCTTACTTCCCTAAA 150
BSNT_05527 0 -------------------------------------------------- 0
BPUM_3569___y 151 AACGATGAATATCCAGTTGATGGTGAAGGTCACCCTATGAAGCTTTTGGC 200
BSNT_05527 0 -------------------------------------------------- 0
BPUM_3569___y 201 ACAAATTAATTTTGGCCAGCTTCCGAAGCTGAAGGATTATCCCGAAACAG 250
BSNT_05527 1 ------------------------------GTGATCT-----------AT 9
.|||||| ||
BPUM_3569___y 251 GACTTCTGCAAATTTTTATTTCTGTGCATGATGATCTTTATGGGATGAAT 300
BSNT_05527 10 TTTGAAAATATCATAGAA-------------------------------A 28
.||||..|||..|.|||| |
BPUM_3569___y 301 ATTGACCATAAAACAGAACAAAAAGATTTTCGGATCAAATTTATTGAGGA 350
BSNT_05527 29 AC-----------GAAGACGAGCTTGTT-TCTGATTTTTCATTTATTGGC 66
|| |||||.||| ||||| .||||||||||.|||
BPUM_3569___y 351 ACCTTTCTTGGCAGAAGAAGAG-TTGTTGACTGATTTTTCTTTT------ 393
BSNT_05527 67 ACAGGCGAA------TG-TGATTTTCCGATTTTATCAGAAGCGGCAGTCG 109
|.||| || ||||||| .|||||
BPUM_3569___y 394 ----GTGAAAATTCCTGATGATTTT--TATTTT----------------- 420
BSNT_05527 110 AGCCTGTGA--AATCTTCGGAATGGGTGCTGCC--TACAGATTTTCAATT 155
||||||| || |||| |..||| |||||
BPUM_3569___y 421 --CCTGTGACGAA-----GGAA-----GGCGCCATTACAG---------- 448
BSNT_05527 156 TGAGCAGTATACGGGCATG-GAAACAAT-------GGAGTT-----CTTT 192
||..||||.||.| |||||.|| ||||.| ||||
BPUM_3569___y 449 ------GTGAACGGTCAAGTGAAACCATTAGTGTAGGAGATTTCCGCTTT 492
BSNT_05527 193 ------------GGTCAGTTCGGC------------GAGGATGAAGAAGA 218
|||.||..||.| ||.|.||.|||||.
BPUM_3569___y 493 GAGAAAATCACAGGTAAGCACGCCTGGGACCTATTTGAAGGTGTAGAAGG 542
BSNT_05527 219 CATTTAT---AATGAA------------CTGGCTGA--------AAAC-- 243
||||.|| .||||| ||.|.||| ||||
BPUM_3569___y 543 CATTGATGGAGATGAAGCGGATGCCTTGCTAGATGAATTTTATGAAACAG 592
BSNT_05527 244 -----GGATTTGGCCATAAAATCGGCGGATACGCTTC----TTTTACCCA 284
||.|||||.||.|||.|.|||||.|| || .|||||.||
BPUM_3569___y 593 AGAGTGGTTTTGGTCACAAATTGGGCGGGTA----TCCAGGGTTTACACA 638
BSNT_05527 285 GCATGATCCACGGGAATAC----GCATATAAAGAACACACCATCATGCTT 330
..|.|||||.|| ||| |.|.||.|||||||.|||.|..||.|.
BPUM_3569___y 639 AGAAGATCCGCG----TACCTATGTAGATCAAGAACATACCGTTCTGTTA 684
BSNT_05527 331 TTACAAATTGATTCAGACGATGATATCGATTCAATGTGGGGAGACGTCGG 380
|||||||||||.|||||.|||||..|.|||..||||||||||||...|||
BPUM_3569___y 685 TTACAAATTGACTCAGATGATGAAGTAGATCTAATGTGGGGAGATTGCGG 734
BSNT_05527 381 CATCGCCAATTTTTTCATCACACCTGACGA--TCTAAGGAAAAAAGACTT 428
.||||||||.||||||||||.|||.||.|| ||.||.||||||| |
BPUM_3569___y 735 AATCGCCAACTTTTTCATCAAACCAGAAGACCTCAAACGAAAAAA----T 780
BSNT_05527 429 TTC--AAACGTTCTGTATAACTGGGACTGCAGCTAA 462
||| .||.||..|.|||||.|||||.|||..||.|
BPUM_3569___y 781 TTCGAGAATGTCGTCTATAATTGGGATTGCTCCTGA 816
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