Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06210 and BPUM_3696
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:40
# Commandline: needle
# -asequence dna-align/BSNT_06210___yycE.1.24716.seq
# -bsequence dna-align/BPUM_3696___yycE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06210___yycE-BPUM_3696___yycE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06210___yycE-BPUM_3696___yycE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06210___yycE
# 2: BPUM_3696___yycE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 455
# Identity: 276/455 (60.7%)
# Similarity: 276/455 (60.7%)
# Gaps: 76/455 (16.7%)
# Score: 656.5
#
#
#=======================================
BSNT_06210___ 1 ATGGGAAAAGGTTTTTCGTCTTTTC-ACGCAGCACAAATCCGAATTGCGC 49
||| ||| ||||..|..||| |.||.||.|||.|.||.||.||.|
BPUM_3696___y 1 ATG---AAA----TTTCAACAGTTCGAAGCCGCTCAATTACGCATCGCAC 43
BSNT_06210___ 50 GTCCTACGGGCCAGCTTGATGAGATTATTCGT--TTTTACGAAGAGGGAC 97
|.||.||.|.|.|..|.||.|||.||.| || |||||.|||||.||..
BPUM_3696___y 44 GCCCAACCGTCAACATGGAAGAGGTTGT--GTCCTTTTATGAAGAAGGCT 91
BSNT_06210___ 98 TGTGTTTGAAACGAATAGGAGAATTT--TCAAAGCATAACGGGTATGACG 145
|..|..|.|||||||||||....||| || |||||.|.||.|||||.|
BPUM_3696___y 92 TAGGGCTCAAACGAATAGGCTCGTTTGATC--AGCATGAAGGATATGATG 139
BSNT_06210___ 146 GTGTCATGTTCGGCCTTCCTCAT--GCCGATTATCATTTGGAATTCACCC 193
||||||||.|.||.||.|||||| || ||..||||||.|||.||||..
BPUM_3696___y 140 GTGTCATGCTGGGGCTCCCTCATCAGC--ATGTTCATTTAGAAATCACAA 187
BSNT_06210___ 194 AGTATGAAGGGGGAAGCA---CTGCCC-CCGTTCCACATCCCG-ACAGCC 238
||.||||| |..||||.| .||||| || ||.|||||.| |||| |
BPUM_3696___y 188 AGCATGAA-GAAGAAGAAAGTTTGCCCGCC---CCGCATCCAGAACAG-C 232
BSNT_06210___ 239 TTCTTGTTTTTTATGTGCCGAATGCAGATGAACTGGCAGCGATCACTTCA 288
|||||||.||.|||.|.|||.||||.||.|||.| ||| .||
BPUM_3696___y 233 TTCTTGTGTTCTATATTCCGGATGCTGAGGAATT--------TCA--GCA 272
BSNT_06210___ 289 AAGCT-AAAGCACATGG--GCTATCA------AGAGGTCGAATC------ 323
|| | |||| |.| || |||.||| .||.|.|.|.||
BPUM_3696___y 273 AA--TGAAAG-AGA-GGTTGCTCTCATTTGGCGGACGGCAAGTCACCTCT 318
BSNT_06210___ 324 AGAGAACCCGTACTGGAGCAATGGG--GGCGTGACGATAGAGGACCCGGA 371
|.| ||.||.||.|| |.||.||| ||.|..||.||.||.||.||.||
BPUM_3696___y 319 ACA-AATCCATATTG--GGAACGGGGTGGAGCAACCATTGAAGATCCAGA 365
BSNT_06210___ 372 TGGCTGGCGGGTCGTTTTTATGAATTCAAAAGGGATATCAGAC------A 415
|||.|..||..|.||..|.|||||..||.|.|| .||||..| |
BPUM_3696___y 366 TGGGTATCGCATTGTGCTCATGAACACAGATGG--CATCACCCCTGTTTA 413
BSNT_06210___ 416 AATGA 420
|
BPUM_3696___y 414 A---- 414
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