Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_06210 and BPUM_3696

See DNA alignment / Visit BSNT_06210 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:40
# Commandline: needle
#    -asequence pep-align/BSNT_06210___yycE.1.24716.seq
#    -bsequence pep-align/BPUM_3696___yycE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_06210___yycE-BPUM_3696___yycE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06210___yycE-BPUM_3696___yycE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06210___yycE
# 2: BPUM_3696___yycE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 139
# Identity:      75/139 (54.0%)
# Similarity:    96/139 (69.1%)
# Gaps:           2/139 ( 1.4%)
# Score: 422.0
# 
#
#=======================================

BSNT_06210___      1 MGKGFSSFHAAQIRIARPTGQLDEIIRFYEEGLCLKRIGEFSKHNGYDGV     50
                       ..|..|.|||:||||||..::|::.||||||.|||||.|.:|.|||||
BPUM_3696___y      1 --MKFQQFEAAQLRIARPTVNMEEVVSFYEEGLGLKRIGSFDQHEGYDGV     48

BSNT_06210___     51 MFGLPHADYHLEFTQYEGGSTAPVPHPDSLLVFYVPNADELAAITSKLKH    100
                     |.||||...|||.|::|...:.|.|||:.|||||:|:|:|...:..:|..
BPUM_3696___y     49 MLGLPHQHVHLEITKHEEEESLPAPHPEQLLVFYIPDAEEFQQMKERLLS     98

BSNT_06210___    101 MGYQEVESENPYWSNGGVTIEDPDGWRVVFMNSKGISDK    139
                     .|.::|.|.||||..||.|||||||:|:|.||:.||:..
BPUM_3696___y     99 FGGRQVTSTNPYWERGGATIEDPDGYRIVLMNTDGITPV    137


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.