Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06218 and BPUM_3703
See
Amino acid alignment /
Visit
BSNT_06218 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:40
# Commandline: needle
# -asequence dna-align/BSNT_06218___yycC.1.24716.seq
# -bsequence dna-align/BPUM_3703___yycC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06218___yycC-BPUM_3703___yycC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06218___yycC-BPUM_3703___yycC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06218___yycC
# 2: BPUM_3703___yycC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 180
# Identity: 103/180 (57.2%)
# Similarity: 103/180 (57.2%)
# Gaps: 48/180 (26.7%)
# Score: 352.5
#
#
#=======================================
BSNT_06218___ 1 ------------------------GTGAGACCTTTGCAAATTTCTGCTGA 26
.||||||||||.|||||.||.||.||
BPUM_3703___y 1 TTGAAAGAGGAGGGAGATTTGCGTATGAGACCTTTACAAATCTCAGCCGA 50
BSNT_06218___ 27 AACTGCACAAAAGCTTGCAGAGTCCTTGAATCTGCCGCTTGAACAGATCA 76
.||.||||||||.|||||.|..||..|.|||.|.||..|||||||.||||
BPUM_3703___y 51 CACGGCACAAAAACTTGCGGCATCACTCAATGTACCCATTGAACAAATCA 100
BSNT_06218___ 77 TGCATATGCCTCAGCATATTCTGCTTGCCAAAATGGCTGAACT-GCA--- 122
||||||||||.||.||||| ||| |||.|||.|||| |||
BPUM_3703___y 101 TGCATATGCCGCAACATAT----CTT-----AATCGCTAAACTAGCAGAA 141
BSNT_06218___ 123 ----AAAAGAGGACAAATCATAG------- 141
||.|||.||.|.|||||..
BPUM_3703___y 142 CTTGAACAGAAGAAAGATCATTCTTCTTAA 171
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.