Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06219 and BPUM_3704
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:40
# Commandline: needle
# -asequence dna-align/BSNT_06219___yycB.1.24716.seq
# -bsequence dna-align/BPUM_3704.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06219___yycB-BPUM_3704.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06219___yycB-BPUM_3704.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06219___yycB
# 2: BPUM_3704
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1360
# Identity: 781/1360 (57.4%)
# Similarity: 781/1360 (57.4%)
# Gaps: 302/1360 (22.2%)
# Score: 2102.0
#
#
#=======================================
BSNT_06219___ 1 ---------------------------TTGCCACATCCACATAATAAA-- 21
|| ||||||.|..|.||||
BPUM_3704 1 ATGGAACAACAACTAGAACAATCAACCTT---ACATCCCCGCAGTAAAGG 47
BSNT_06219___ 22 AAAATCCAATCATTTTGGCTGATCACCGGCATTATCTTTATCGCCTTTAA 71
|.||.|| |||.| ||||||..|.||.|||.|..||||.||.|||||
BPUM_3704 48 ACAAACC-ATCCT----GCTGATTGCTGGGATTTTACTTATTGCATTTAA 92
BSNT_06219___ 72 CTTACGGCCCGCGATCACTTCAGTCGGTCCGGTCATCAGCTCTATCCGGG 121
|.||||.||.||.||.||.||.||.||.||..|||||.|..|.||.||..
BPUM_3704 93 CCTACGACCTGCCATTACGTCTGTTGGCCCTCTCATCGGTGCCATTCGTT 142
BSNT_06219___ 122 CAGAACTGCACATGTCCAATGGGGCAGCCGGTTTTTTGACCGCACTGCCG 171
|.||..||||..||||.||.||....||.||||||.|.||..|..|.||.
BPUM_3704 143 CCGATTTGCAGTTGTCTAACGGACTTGCAGGTTTTCTTACGACGTTACCA 192
BSNT_06219___ 172 CTGCTTTCGTTTGCAGTTCTTTCTCCGCTTGCACCTAAGCTTGGACAGCG 221
|||||.||.||.|||.|.||||||||..||.|||||||..|.|||.||||
BPUM_3704 193 CTGCTCTCATTCGCATTGCTTTCTCCCATTACACCTAAAATCGGAAAGCG 242
BSNT_06219___ 222 CCTCGGAAATGAGCGAACTTTATGGCTAGGTCTCGTGATACTG--CTTAT 269
.||.||.||.||.|||||..|.||||||||.|||| ||| |||.|
BPUM_3704 243 TCTGGGCAACGAACGAACCCTTTGGCTAGGGCTCG-----CTGTCCTTTT 287
BSNT_06219___ 270 CGGCGTTT-------TGACTCGTTCTACCGGCTATACTGCCGCTTTGTT- 311
|||| |||.|||.| ||.||.|||
BPUM_3704 288 ----GTTTGGGATTGTGATTCGCT----------------CGTTTGGTTC 317
BSNT_06219___ 312 ----------TT-----TCGGAACGGCACTTATCGGCGTCGGGATTGCGA 346
|| |||||||.|||||||||||.|||||||||||||
BPUM_3704 318 CATCACCTTCTTAATGATCGGAACCGCACTTATCGGTGTCGGGATTGCGA 367
BSNT_06219___ 347 TTGGTAACGTACTTTTGCCAAGCTTAATCAAACATAAATACCCTGAAAAG 396
|..||||.||.||.||.||..|..|..|.||.|||||||..||||.|.|.
BPUM_3704 368 TATGTAATGTGCTCTTACCGGGGCTCGTGAAGCATAAATTTCCTGCACAT 417
BSNT_06219___ 397 CCAGGGATCGTGATCAGCCTGTATACGACATCAATGAATATATTCGCAGC 446
.|.||..|..|||..||..|.||||||||.||.|||....|.||.||.||
BPUM_3704 418 GCTGGTTTAATGACAAGTGTCTATACGACCTCGATGTCCGTCTTTGCGGC 467
BSNT_06219___ 447 TTTAGCATCGGGTGTCAGCGTTCC-TTTAGCGACCCAGATGGATGGCGGA 495
..|.|||||.||||||||.||||| .|.|||.|..|| |||..||||||.
BPUM_3704 468 ACTTGCATCAGGTGTCAGTGTTCCGCTCAGCCATGCA-ATGCCTGGCGGC 516
BSNT_06219___ 496 TGGAA-ACAGGCCTTTCTCTTATGGGGCGGGCTGGCTTTACTTGCATTGC 544
||||| ||| .|.||.|||.||||||..||.||.||..|.|||||..||.
BPUM_3704 517 TGGAATACA-TCATTCCTCGTATGGGCTGGCCTTGCACTTCTTGCGATGA 565
BSNT_06219___ 545 TAATCTGGATACCTCAGCTGCGCCACCGGGATACGGCAAACCAGACAATG 594
|..|||||...||.|||||.|..||.|.|.|.||.||
BPUM_3704 566 TGGTCTGGGCTCCGCAGCTTCTTCATCAGAACACAGC------------- 602
BSNT_06219___ 595 AAGCTG-CAATCCAGTTCCATTT--------GGGCTTCCAAAATG----- 630
.|||| ||| .|| ||||| |.||..||||.|||
BPUM_3704 603 -GGCTGTCAA--AAG---CATTTCGCTCACAGAGCAGCCAATATGGCGTT 646
BSNT_06219___ 631 --------GCATGGTATGTCACCATCTTTATGGGCCTGCAATCGTTTTTA 672
||||||.|.||.||..|.||||||||.|||||.||.||..|.
BPUM_3704 647 CACGTGTCGCATGGCAGGTAACTTTATTTATGGGGCTGCAGTCATTCCTT 696
BSNT_06219___ 673 TTTTACAGCAGCATCGCTTGGTTTCCTGAAATTCTCCGTTCACA-CG--- 718
||.||.|||||||||||||||||||||||.|| .||.||| ||
BPUM_3704 697 TTCTATAGCAGCATCGCTTGGTTTCCTGATAT-----CTTAACATCGCAT 741
BSNT_06219___ 719 GGATTGA---TACGGCAACAGCCGGATGGATGGTATCACTCATGCAATTT 765
|||.||| || .||||||||||.||||||.|.||..|.|||||.|||
BPUM_3704 742 GGAATGAATCTA--TCAACAGCCGGTTGGATGCTGTCCATTATGCAGTTT 789
BSNT_06219___ 766 GCGAGTCTGCCTTCCACTTTTCTGACACCAGTTTTAGCTGACCGTGTGAA 815
|...|.|||||.|||||.|||||..||||.|||||.||.|| ||
BPUM_3704 790 GTTGGGCTGCCATCCACCTTTCTAGCACCTGTTTTTGCAGA-------AA 832
BSNT_06219___ 816 ------------ACAGCAGCGCGGTATCGT-TGCGGCGC-TGGCCTCAGT 851
|.|| |.||| |.|| |.||| || ||.||| .||
BPUM_3704 833 AATTAAAAACACAAAG-ACCGC----TTGTCTTCGG-GCTTGTCCT-TGT 875
BSNT_06219___ 852 TTAT---------CTGATCGGCCTT----TGCGGATTATTAGCGGGCGGA 888
.||| .|||||||.||| | |||| ||...||
BPUM_3704 876 GTATTTACTTGGGATGATCGGACTTCTTCT-CGGA--------GGATCGA 916
BSNT_06219___ 889 AGCC-ATACATTGCTTGCCATCTGGATGATC--------ATT-ATCGGTA 928
.||| || ||||| ||||| ||| |||||||
BPUM_3704 917 CGCCTAT-------------TCTGG-TGATCTCTGTTTTATTGATCGGTA 952
BSNT_06219___ 929 TCGGGCAAGGCTCCAGCATTAGTCTGGCGCTCACTTTGATTGGTCTCCGC 978
|.||.|||||..|.|||||.|||||.||.|||||.||.||.||..|.||
BPUM_3704 953 TTGGACAAGGTGCAAGCATCAGTCTTGCCCTCACATTTATCGGATTACG- 1001
BSNT_06219___ 979 AGTGAAAATGCCCAA-------CAGGCCGCTGCGCTGTCAGGCATGTCTC 1021
||.|| |||| ||.|||||||||||.||.||.|||.|.|
BPUM_3704 1002 ---GACAA---CCAATATGGAGCAAGCCGCTGCGCTTTCTGGAATGGCGC 1045
BSNT_06219___ 1022 AGTCATTCGGCTACCTGCTGGCAGCAGTCGGGCCAATCTTTGTCGGCTAT 1071
||||..||||.||..|..|.||.||.||.||.|||.||.|..|||| |||
BPUM_3704 1046 AGTCTATCGGTTATTTATTAGCCGCCGTTGGTCCACTCATGATCGG-TAT 1094
BSNT_06219___ 1072 -CTCTTTGACCAGACGCATTCATGGACG--ATGCC--------------G 1104
||.|||||....||.|||.|||||||| || || .
BPUM_3704 1095 CCTTTTTGATGTCACACATACATGGACGCCAT-CCATTATCATCTTTATC 1143
BSNT_06219___ 1105 ATAGTGC---TTCTCATTGCTGCCCTGATC--GTAATGGGAGCAGCTGGA 1149
||.||.| ||.||| ||...|.||| || |||.| .||||||
BPUM_3704 1144 ATCGTTCTATTTTTCA----TGTTTTTATCCGGT-ATGCG---TGCTGGA 1185
BSNT_06219___ 1150 CAGAGAGCCGGACGAGATCGATACATTTTTCAGTCAGAAAAACAAAGAAA 1199
|..||.| ||.||| |||||| |
BPUM_3704 1186 CGAAGCG----------TCTATA----TTTCAG----------------A 1205
BSNT_06219___ 1200 TTCAGCATAA 1209
||.|
BPUM_3704 1206 TTGA------ 1209
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