Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03186 and BPUM_3715

See Amino acid alignment / Visit BSNT_03186 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:40
# Commandline: needle
#    -asequence dna-align/BSNT_03186.1.24716.seq
#    -bsequence dna-align/BPUM_3715.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03186-BPUM_3715.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03186-BPUM_3715.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03186
# 2: BPUM_3715
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1089
# Identity:     369/1089 (33.9%)
# Similarity:   369/1089 (33.9%)
# Gaps:         594/1089 (54.5%)
# Score: 734.0
# 
#
#=======================================

BSNT_03186         0 --------------------------------------------------      0
                                                                       
BPUM_3715          1 ATGAATAGAGGCTTGTTACTTCATGATAGGAGGTCATTAGAAGTGAAGAA     50

BSNT_03186         0 --------------------------------------------------      0
                                                                       
BPUM_3715         51 AACAGAAGGAATTCACCATATCACAGCAATTGTAGGGCATCCTCAGGAGA    100

BSNT_03186         0 --------------------------------------------------      0
                                                                       
BPUM_3715        101 ACGTTGATTTTTATGCAGGTGTTTTAGGACTTCGTCTCGTGAAGAAGACC    150

BSNT_03186         0 --------------------------------------------------      0
                                                                       
BPUM_3715        151 GTGAATTTTGATGATCCAGGTACTTACCATTTATATTTTGGAAATGAAGG    200

BSNT_03186         0 --------------------------------------------------      0
                                                                       
BPUM_3715        201 AGGATCTCCGGGAACGATTATTACGTTTTTCCCTTGGCCAGGTGCTCAAA    250

BSNT_03186         1 ------------------------------------------TTGT----      4
                                                               ||||    
BPUM_3715        251 AGGGACAAATTGGCGCGGGTCAAGTGGGGGTGACGACATATGTTGTACCA    300

BSNT_03186         5 --------------TTGGTGAAA--AAGGTCT------------TATTT-     25
                                   ||..||.||  ||.||||            ||||| 
BPUM_3715        301 CCAGGCGCTTTCTCTTTCTGGAAGGAACGTCTTGAGCAGTTTGATATTTC    350

BSNT_03186        26 -----------TTGA------TGATACAGAAGACCTTCCGCT--------     50
                                ||||      ||||   |||| ||||.|.||        
BPUM_3715        351 CTATGAAATGGTTGAACGCTTTGAT---GAAG-CCTTTCTCTCATTTGAA    396

BSNT_03186        51 ---------GGC--GATCATGGAG------GA---TGC-----GAAAAGC     75
                              |||  |.|.||.|||      ||   |||     |||||  
BPUM_3715        397 GATCCACACGGCTTGTTGATAGAGCTAGTAGAACGTGCGGAGGGAAAA--    444

BSNT_03186        76 GGCAAAAGCGAGTGGACGCCTGACGGGATCACAACAAATGAAGCAAT-TA    124
                       ||||| .||.|||||...|.||||..|.||..||.|||.|||.|| .|
BPUM_3715        445 --CAAAA-TGATTGGACATTTAACGGAGTTACGCCAGATGTAGCGATAAA    491

BSNT_03186       125 CGGGAATGAAAGGTGTGCTGCTATATT----------------CCTACGA    158
                     .|||..||   ||.|.||||.|.||||                |..||||
BPUM_3715        492 AGGGTTTG---GGGGAGCTGTTTTATTAACATCACAGCCAGAGCAAACGA    538

BSNT_03186       159 CCCGCAG--GC--GACCATACAATTG--TT--AACGGAAAGCTTTGGATA    200
                       .||||  ||  ||.||.|||||.|  ||  |||||     .|||||  
BPUM_3715        539 --TGCAGCTGCTAGAACAAACAATGGGATTCGAACGG-----GTTGGA--    579

BSNT_03186       201 CACCAAAGTGGCCGAAGAAGA-----CCAGATT-----------GTCAGA    234
                               ||.|||||.||     ..|||||           ||.|||
BPUM_3715        580 ----------GCAGAAGAGGATTATGTAAGATTCCGTTCATTTGGTGAGA    619

BSNT_03186       235 CTGGCAACCTCAGCGGCCGTCGGCGGTGTCATTGATGT----------CC    274
                     ..||.||                   ||||||||||||          ||
BPUM_3715        620 TAGGGAA-------------------TGTCATTGATGTGAACAAGACACC    650

BSNT_03186       275 ATTTACACCCTGAAAAAAGAGGAGTCGGAGGATATGGTACGGTACACCAT    324
                     ..||.|||.|.||...|.| ||.||.||       |||  |||.||.|||
BPUM_3715        651 TGTTGCACGCGGACGTATG-GGTGTTGG-------GGT--GGTGCATCAT    690

BSNT_03186       325 ATAGCGTTTCGGACAAAGAAAAACGAACAGGCGAAAT------GGCTGCC    368
                     ||.||.|   |||.|..||...|.||.||||    ||      |..||.|
BPUM_3715        691 ATTGCAT---GGAGAGCGACCGATGATCAGG----ATCAGTTAGATTGGC    733

BSNT_03186       369 GA----TTATTGCTGAAA------ACCATCTG---CCTTCGTCAGAAATT    405
                     .|    .||||||..|||      |.||..||   |||..|..|||    
BPUM_3715        734 AAAGACATATTGCACAAAGCGGGTATCAAGTGACACCTGTGCAAGA----    779

BSNT_03186       406 CTCGACAGGGAATACTTTACATCA-----GTTTATTTCAGGGAGAAAGGC    450
                      ||||.|         ||||.|||     .|||||||.||.|||...|||
BPUM_3715        780 -TCGAAA---------TTACTTCAATGCGATTTATTTTAGAGAGCTTGGC    819

BSNT_03186       451 GGTATCTTATTTGAAATTGCCACAGATGAACCGGGCTTT-------ATGA    493
                     ||.||.||||||||||||||.||.|||...||.||.|||       ||||
BPUM_3715        820 GGCATATTATTTGAAATTGCAACTGATCCTCCAGGGTTTGCACACGATGA    869

BSNT_03186       494 --CAGATGAAACGTTTTCTGAGCTAGGGACTTCCTTAAAACTGCC-----    536
                       |||..|||||    |.||.|..|.|     |.||.|||||.||     
BPUM_3715        870 ATCAGTGGAAAC----TATGGGTGAAG-----CATTGAAACTTCCACCAC    910

BSNT_03186       537 ----TGAATGGCTGGAGAAACATAGAC------ACCAAAT--TACAGACA    574
                         ||||      |.|.|.|.|||.|      |.|||||  |.|.|.||
BPUM_3715        911 AATATGAA------GCGCAGCGTAGTCAGATTGAACAAATTGTGCTGCCA    954

BSNT_03186       575 TTTTACCTGA---ACTTTAA-------------------    591
                     .|..|..|||   |.||.||                   
BPUM_3715        955 ATAGAAGTGAGAGAGTTGAAAGGGAAAGGAGATGCATGA    993


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