Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00004 and BSU00040

See Amino acid alignment / Visit BSNT_00004 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:15:49
# Commandline: needle
#    -asequence dna-align/BSNT_00004___recF.1.22522.seq
#    -bsequence dna-align/BSU00040___recF.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00004___recF-BSU00040___recF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00004___recF-BSU00040___recF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00004___recF
# 2: BSU00040___recF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1113
# Identity:    1107/1113 (99.5%)
# Similarity:  1107/1113 (99.5%)
# Gaps:           0/1113 ( 0.0%)
# Score: 5511.0
# 
#
#=======================================

BSNT_00004___      1 TTGTATATCCAGAACTTAGAACTTTCATCTTACCGCAACTACGACCATGC     50
                     |||||||||||||||||||||||..|||||||||||||||||||||||||
BSU00040___re      1 TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGC     50

BSNT_00004___     51 TGAACTTCAATTTGAAAATAAAGTAAATGTGATCATCGGAGAAAACGCCC    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re     51 TGAACTTCAATTTGAAAATAAAGTAAATGTGATCATCGGAGAAAACGCCC    100

BSNT_00004___    101 AGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAA    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    101 AGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAA    150

BSNT_00004___    151 TCGCACCGGACATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTA    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    151 TCGCACCGGACATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTA    200

BSNT_00004___    201 TGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCGATCCCGATGC    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    201 TGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCGATCCCGATGC    250

BSNT_00004___    251 AGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAA    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    251 AGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAA    300

BSNT_00004___    301 CAGCAAAAGCTCAGCCAGTATGTCGGGGCCCTCAACACCATTATGTTCGC    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    301 CAGCAAAAGCTCAGCCAGTATGTCGGGGCCCTCAACACCATTATGTTCGC    350

BSNT_00004___    351 GCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    351 GCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT    400

BSNT_00004___    401 TTCTTGACATGGAAATTGGACAGGTTTCTCCCGTCTATCTTCATGATCTT    450
                     ||||||||||||||||.||||||||||||||||||||.||||||||||||
BSU00040___re    401 TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTACCTTCATGATCTT    450

BSNT_00004___    451 TCTCTTTACCAGAAAATCCTTTCCCAGCGGAATCATTTTTTGAAACAGCT    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    451 TCTCTTTACCAGAAAATCCTTTCCCAGCGGAATCATTTTTTGAAACAGCT    500

BSNT_00004___    501 GCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATC    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    501 GCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATC    550

BSNT_00004___    551 AGCTTATAGAAGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACA    600
                     |||||.||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    551 AGCTTGTAGAAGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACA    600

BSNT_00004___    601 GCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCATCTCAAGAGG    650
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    601 GCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCATCTCAAGAGG    650

BSNT_00004___    651 GCTTGAAGAACTTACCCTGAAATACCATACAGCTCTTGATGTATCAGATC    700
                     ||||||||||||.|||||||||||||||||||||||||||||||||||||
BSU00040___re    651 GCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGATGTATCAGATC    700

BSNT_00004___    701 CCCTAGATTTGTCGAAAATAGGAGATAGCTATCAAGAAGCGTTTTCTAAA    750
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    701 CCCTAGATTTGTCGAAAATAGGAGATAGCTATCAAGAAGCGTTTTCTAAA    750

BSNT_00004___    751 TTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG    800
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    751 TTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG    800

BSNT_00004___    801 CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTT    850
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    801 CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTT    850

BSNT_00004___    851 CTCAAGGACAGCAGCGAACGACGGCGTTGTCCCTTAAGCTGGCGGAGATT    900
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    851 CTCAAGGACAGCAGCGAACGACGGCGTTGTCCCTTAAGCTGGCGGAGATT    900

BSNT_00004___    901 GACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGA    950
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    901 GACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGA    950

BSNT_00004___    951 TGTACTGAGTGAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGA   1000
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re    951 TGTACTGAGTGAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGA   1000

BSNT_00004___   1001 TCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGTTGATGGCATT   1050
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re   1001 TCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGTTGATGGCATT   1050

BSNT_00004___   1051 GATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGC   1100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00040___re   1051 GATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGC   1100

BSNT_00004___   1101 GTTAGTGAAGTGA   1113
                     |||||||||||||
BSU00040___re   1101 GTTAGTGAAGTGA   1113


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