Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00350 and BSU01800

See Amino acid alignment / Visit BSNT_00350 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:16:22
# Commandline: needle
#    -asequence dna-align/BSNT_00350.1.22522.seq
#    -bsequence dna-align/BSU01800___alkA.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00350-BSU01800___alkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00350-BSU01800___alkA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00350
# 2: BSU01800___alkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 912
# Identity:     531/912 (58.2%)
# Similarity:   531/912 (58.2%)
# Gaps:         378/912 (41.4%)
# Score: 2643.0
# 
#
#=======================================

BSNT_00350         1 GTGGCATGGCATGAAGTCAATGATGTTATTGTCATTACATTACCTGAAAT     50
                     |||.||||||||||||||||||||||||||||||||||||||||||||||
BSU01800___al      1 GTGACATGGCATGAAGTCAATGATGTTATTGTCATTACATTACCTGAAAT     50

BSNT_00350        51 TTTCGACATGAATGCGAACCTAGGCTACCTAACCAGGGAAAAAAATGAAT    100
                     |||||||||||||||||||||.||||||||||||||||||||||||||||
BSU01800___al     51 TTTCGACATGAATGCGAACCTTGGCTACCTAACCAGGGAAAAAAATGAAT    100

BSNT_00350       101 GCATGTATGAAATAGAGAACAATATCATTACAAAAGTTATAGCCATTGGG    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01800___al    101 GCATGTATGAAATAGAGAACAATATCATTACAAAAGTTATAGCCATTGGG    150

BSNT_00350       151 GAAATTCGGTCCTTAGTGCAGGTAAGCGTAATCAATAATAAACAAATGAT    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01800___al    151 GAAATTCGGTCCTTAGTGCAGGTAAGCGTAATCAATAATAAACAAATGAT    200

BSNT_00350       201 TGTTCAATTCCTAAACGATTCTAGACCTGTTGAGCAGTGGAAACGGGAAG    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01800___al    201 TGTTCAATTCCTAAACGATTCTAGACCTGTTGAGCAGTGGAAACGGGAAG    250

BSNT_00350       251 AGATTGTAAAATATATTCATGAATGGTTTGATCTTGATAACGATTTAACT    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01800___al    251 AGATTGTAAAATATATTCATGAATGGTTTGATCTTGATAACGATTTAACT    300

BSNT_00350       301 CCATTTTATGAAATGGCAAAAGCAGATCCATTACTTAAAATGCCTGCCCG    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01800___al    301 CCATTTTATGAAATGGCAAAAGCAGATCCATTACTTAAAATGCCTGCCCG    350

BSNT_00350       351 AAAATTTTATGGGTTGCGAGTGATCGGCATTCCCGATTTATTTGAAGCTT    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01800___al    351 AAAATTTTATGGGTTGCGAGTGATCGGCATTCCCGATTTATTTGAAGCTT    400

BSNT_00350       401 TATGTTGGGGAGTTTTAGGGCAACAAATTAACTTAGCCTTCGCGTACTCC    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01800___al    401 TATGTTGGGGAGTTTTAGGGCAACAAATTAACTTAGCCTTCGCGTACTCC    450

BSNT_00350       451 TTAAAGAAGCAATTTGTAGAAGCATTTGGCGATTCTATTGAATGGAATGG    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01800___al    451 TTAAAGAAGCAATTTGTAGAAGCATTTGGCGATTCTATTGAATGGAATGG    500

BSNT_00350       501 TAAAAAGTATTGGGTGTTCCCACCGTACGAGTGA----------------    534
                     |||||||||||||||||||||||||||||||.||                
BSU01800___al    501 TAAAAAGTATTGGGTGTTCCCACCGTACGAGCGAATTGCACGGTTAACCC    550

BSNT_00350       534 --------------------------------------------------    534
                                                                       
BSU01800___al    551 CTACCGACCTGGCAGATATTAAAATGACGGTGAAAAAAAGTGAATATATC    600

BSNT_00350       534 --------------------------------------------------    534
                                                                       
BSU01800___al    601 ATTGGAATAGCCAGATTAATGGCAAGTGGAGAATTATCGAGGGAAAAATT    650

BSNT_00350       534 --------------------------------------------------    534
                                                                       
BSU01800___al    651 AATGAAAATGAACTTTAAAGATGCTGAAAAAAACTTAATTAAAATACGAG    700

BSNT_00350       534 --------------------------------------------------    534
                                                                       
BSU01800___al    701 GAATCGGTCCTTGGACAGCCAATTATGTTCTAATGCGCTGCCTTAGGTTC    750

BSNT_00350       534 --------------------------------------------------    534
                                                                       
BSU01800___al    751 CCGACAGCTTTTCCAATCGATGATGTGGGTCTTATTCATTCGATAAAAAT    800

BSNT_00350       534 --------------------------------------------------    534
                                                                       
BSU01800___al    801 ATTACGTAATATGAACCGAAAGCCTACGAAAGATGAAATCTTAGAAATAT    850

BSNT_00350       534 --------------------------------------------------    534
                                                                       
BSU01800___al    851 CGGTTCCATGGAAAGAATGGCAATCATACGCTACCTTTTATTTATGGCGT    900

BSNT_00350       534 ------------    534
                                 
BSU01800___al    901 GTCCTTTACTGA    912


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.