Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00574 and BSU03250

See Amino acid alignment / Visit BSNT_00574 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:16:46
# Commandline: needle
#    -asequence dna-align/BSNT_00574___ycgR.1.22522.seq
#    -bsequence dna-align/BSU03250___ycgR.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00574___ycgR-BSU03250___ycgR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00574___ycgR-BSU03250___ycgR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00574___ycgR
# 2: BSU03250___ycgR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 903
# Identity:     881/903 (97.6%)
# Similarity:   881/903 (97.6%)
# Gaps:          18/903 ( 2.0%)
# Score: 4389.0
# 
#
#=======================================

BSNT_00574___      1 ATGAGCGGAGGTTTTATTGTGACAGCACAATCATCTTTTCTTCAGCTGAA     50
                                       ||||||||||||||||||||||||||||||||
BSU03250___yc      1 ------------------GTGACAGCACAATCATCTTTTCTTCAGCTGAA     32

BSNT_00574___     51 TTCTATTTTTATCAGCATTTTAATAGAAGCCATTCCGTTTATTCTGATTG    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc     33 TTCTATTTTTATCAGCATTTTAATAGAAGCCATTCCGTTTATTCTGATTG     82

BSNT_00574___    101 GCGTCATACTTTCCGGAATCATTCAAATGTTTGTTTCTGAAGAAATGATT    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc     83 GCGTCATACTTTCCGGAATCATTCAAATGTTTGTTTCTGAAGAAATGATT    132

BSNT_00574___    151 GCAAGAATCATGCCGAAAAACCGTTTTCTCGCCGTTTTATTCGGTGCGCT    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    133 GCAAGAATCATGCCGAAAAACCGTTTTCTCGCCGTTTTATTCGGTGCGCT    182

BSNT_00574___    201 GGCCGGCGTTTTATTTCCCGCCTGCGAATGCGGCATCATCCCGATTACGA    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    183 GGCCGGCGTTTTATTTCCCGCCTGCGAATGCGGCATCATCCCGATTACGA    232

BSNT_00574___    251 GGCGGCTTCTGTTAAAGGGAGTTCCTCTGCATGCGGGCGTTGCTTTCATG    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    233 GGCGGCTTCTGTTAAAGGGAGTTCCTCTGCATGCGGGCGTTGCTTTCATG    282

BSNT_00574___    301 CTGACCGCGCCTATCATTAATCCTATCGTTTTATTTTCTACTTATATTGC    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    283 CTGACCGCGCCTATCATTAATCCTATCGTTTTATTTTCTACTTATATTGC    332

BSNT_00574___    351 GTTCGGGAATAGATGGAGCGTGGTCTTTTACAGAGGCGGACTGGCTCTCG    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    333 GTTCGGGAATAGATGGAGCGTGGTCTTTTACAGAGGCGGACTGGCTCTCG    382

BSNT_00574___    401 CCGTTTCGCTGATCATCGGGGTCATCTTATCCTATCAATTTAAAGATAAC    450
                     |||||||||||||||||||||||||||||||||||||||||||.||||||
BSU03250___yc    383 CCGTTTCGCTGATCATCGGGGTCATCTTATCCTATCAATTTAAGGATAAC    432

BSNT_00574___    451 CAGCTTTTAAAGCCTGATGAACCCGGGCACCACCATCATCATCACGGCAC    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    433 CAGCTTTTAAAGCCTGATGAACCCGGGCACCACCATCATCATCACGGCAC    482

BSNT_00574___    501 CTTGCTCCAAAAACTGGGCGGGACCTTGCGGCATGCCATTGATGAATTTT    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    483 CTTGCTCCAAAAACTGGGCGGGACCTTGCGGCATGCCATTGATGAATTTT    532

BSNT_00574___    551 TCTCCGTGGGGAAATATTTAATCATCGGCGCCTTTATCGCAGCCGCTATG    600
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    533 TCTCCGTGGGGAAATATTTAATCATCGGCGCCTTTATCGCAGCCGCTATG    582

BSNT_00574___    601 CAGACGTATGTCAAAACATCCACTCTGCTTGCGATCGGGCAGAATGATGT    650
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    583 CAGACGTATGTCAAAACATCCACTCTGCTTGCGATCGGGCAGAATGATGT    632

BSNT_00574___    651 ATCCTCTTCCCTCGTGATGATGGGTCTGGCGTTTGTCCTGTCGCTTTGTT    700
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    633 ATCCTCTTCCCTCGTGATGATGGGTCTGGCGTTTGTCCTGTCGCTTTGTT    682

BSNT_00574___    701 CAGAAGTTGATGCGTTCATCGCGTCTTCCTTCAGCAGCACATTTTCATTA    750
                     ||||||||||||||||||||||||||||||||||||||||.|||||||||
BSU03250___yc    683 CAGAAGTTGATGCGTTCATCGCGTCTTCCTTCAGCAGCACGTTTTCATTA    732

BSNT_00574___    751 GGATCGTTAATCGCCTTTCTCGTCTTTGGCGCAATGGTGGATATTAAGAA    800
                     |||||||||||||||||||||||||||||.||||||||||||||||||||
BSU03250___yc    733 GGATCGTTAATCGCCTTTCTCGTCTTTGGTGCAATGGTGGATATTAAGAA    782

BSNT_00574___    801 TCTATTGATGATGCTTGCGGCCTTCAAAAAACGATTTGTTTTCCTGCTGA    850
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    783 TCTATTGATGATGCTTGCGGCCTTCAAAAAACGATTTGTTTTCCTGCTGA    832

BSNT_00574___    851 TTACCTACATTGTCGTGATTGTTTTAGCGGGATCACTACTGGTAAAGGGG    900
                     ||||.|||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    833 TTACATACATTGTCGTGATTGTTTTAGCGGGATCACTACTGGTAAAGGGG    882

BSNT_00574___    901 TGA    903
                     |||
BSU03250___yc    883 TGA    885


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00574 and BSU03250

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
