Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00574 and BSU03250

See DNA alignment / Visit BSNT_00574 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:16:46
# Commandline: needle
#    -asequence pep-align/BSNT_00574___ycgR.1.22522.seq
#    -bsequence pep-align/BSU03250___ycgR.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00574___ycgR-BSU03250___ycgR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00574___ycgR-BSU03250___ycgR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00574___ycgR
# 2: BSU03250___ycgR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 300
# Identity:     293/300 (97.7%)
# Similarity:   294/300 (98.0%)
# Gaps:           6/300 ( 2.0%)
# Score: 1447.0
# 
#
#=======================================

BSNT_00574___      1 MSGGFIVTAQSSFLQLNSIFISILIEAIPFILIGVILSGIIQMFVSEEMI     50
                           :|||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc      1 ------MTAQSSFLQLNSIFISILIEAIPFILIGVILSGIIQMFVSEEMI     44

BSNT_00574___     51 ARIMPKNRFLAVLFGALAGVLFPACECGIIPITRRLLLKGVPLHAGVAFM    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc     45 ARIMPKNRFLAVLFGALAGVLFPACECGIIPITRRLLLKGVPLHAGVAFM     94

BSNT_00574___    101 LTAPIINPIVLFSTYIAFGNRWSVVFYRGGLALAVSLIIGVILSYQFKDN    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc     95 LTAPIINPIVLFSTYIAFGNRWSVVFYRGGLALAVSLIIGVILSYQFKDN    144

BSNT_00574___    151 QLLKPDEPGHHHHHHGTLLQKLGGTLRHAIDEFFSVGKYLIIGAFIAAAM    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    145 QLLKPDEPGHHHHHHGTLLQKLGGTLRHAIDEFFSVGKYLIIGAFIAAAM    194

BSNT_00574___    201 QTYVKTSTLLAIGQNDVSSSLVMMGLAFVLSLCSEVDAFIASSFSSTFSL    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    195 QTYVKTSTLLAIGQNDVSSSLVMMGLAFVLSLCSEVDAFIASSFSSTFSL    244

BSNT_00574___    251 GSLIAFLVFGAMVDIKNLLMMLAAFKKRFVFLLITYIVVIVLAGSLLVKG    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03250___yc    245 GSLIAFLVFGAMVDIKNLLMMLAAFKKRFVFLLITYIVVIVLAGSLLVKG    294


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