Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04223 and BSU28940

See Amino acid alignment / Visit BSNT_04223 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:41
# Commandline: needle
#    -asequence dna-align/BSNT_04223___ysaA.1.22522.seq
#    -bsequence dna-align/BSU28940___ysaA.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04223___ysaA-BSU28940___ysaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04223___ysaA-BSU28940___ysaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04223___ysaA
# 2: BSU28940___ysaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 831
# Identity:     770/831 (92.7%)
# Similarity:   770/831 (92.7%)
# Gaps:          48/831 ( 5.8%)
# Score: 3798.0
# 
#
#=======================================

BSNT_04223___      1 ATGAGCCTTTTGGCAGAAAGATTTGAATCTGAAGCAGAGGAGAAGATCAT     50
                                                                     ||
BSU28940___ys      1 ------------------------------------------------AT      2

BSNT_04223___     51 GAAAGCCGTATTTTTTGATTTAGATGATACACTACTTTGGGACGAAAAAA    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU28940___ys      3 GAAAGCCGTATTTTTTGATTTAGATGATACACTACTTTGGGACGAAAAAA     52

BSNT_04223___    101 GCGTCAGAACAACATTTGCAGAAACTTGCTTACAGGCGGAGAAAAAATAT    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU28940___ys     53 GCGTCAGAACAACATTTGCAGAAACTTGCTTACAGGCGGAGAAAAAATAT    102

BSNT_04223___    151 GGCCTTGACCCTGAGGAATTCGAAGCAGCTGTTCGCGAAGCAGCGAGAGA    200
                     |||||||.|||||||||||||||||||||||||||||||||.||||||||
BSU28940___ys    103 GGCCTTGCCCCTGAGGAATTCGAAGCAGCTGTTCGCGAAGCGGCGAGAGA    152

BSNT_04223___    201 ATTGTACATGTCATATGAGACGTATCCATATACAGTGATGATCGGCATTA    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU28940___ys    153 ATTGTACATGTCATATGAGACGTATCCATATACAGTGATGATCGGCATTA    202

BSNT_04223___    251 ACCCGTTTGAAGGACTGTGGTCCAATTTCTCAGAGCCAATCAGTGAAGGT    300
                     |||||||||||||||||||||||||||||||||||||||||||||||||.
BSU28940___ys    203 ACCCGTTTGAAGGACTGTGGTCCAATTTCTCAGAGCCAATCAGTGAAGGC    252

BSNT_04223___    301 TTTCAAAAGCTGAACAAGATTGTGCCGGAGTACAGAAGAAATGCATGGAC    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU28940___ys    253 TTTCAAAAGCTGAACAAGATTGTGCCGGAGTACAGAAGAAATGCATGGAC    302

BSNT_04223___    351 AAACGGACTGAAAGCGCTTGGGATCGATGATCCTGCATATGGCGAATACT    400
                     .|||||||||||||||||||||||||||||||||||||||||||||||||
BSU28940___ys    303 CAACGGACTGAAAGCGCTTGGGATCGATGATCCTGCATATGGCGAATACT    352

BSNT_04223___    401 TGGGAGAGTTTTTTGCGGCAGAGCGCAGAAAACGCCCGTTTGTATATGAT    450
                     |||||||||||||||||||||||||||||||.||||||||||||||||||
BSU28940___ys    353 TGGGAGAGTTTTTTGCGGCAGAGCGCAGAAAGCGCCCGTTTGTATATGAT    402

BSNT_04223___    451 GAAACATTTGCTGTACTCGATCAATTAAAAGGCAAGTATGAATTATTGCT    500
                     |||||.||||||||||||||||||||||||||||||||||||||||||||
BSU28940___ys    403 GAAACTTTTGCTGTACTCGATCAATTAAAAGGCAAGTATGAATTATTGCT    452

BSNT_04223___    501 TTTGACAAATGGCGATCCGAGTCTGCAAAAGGAGAAGCTTGCCGGCGTAC    550
                     ||||||||||||||||||.|||||||||||||||||||||||||||||.|
BSU28940___ys    453 TTTGACAAATGGCGATCCTAGTCTGCAAAAGGAGAAGCTTGCCGGCGTGC    502

BSNT_04223___    551 CTGAGCTTGCTCCTTACTTCAATGAAATCGTCATCTCGGGCGCATTCGGC    600
                     |||||||.||||||||||||||||||||||||||||||||||||||||||
BSU28940___ys    503 CTGAGCTCGCTCCTTACTTCAATGAAATCGTCATCTCGGGCGCATTCGGC    552

BSNT_04223___    601 AAGGGCAAGCCGGATGTTTCAATTTTTGAACACTGCCTTAAGCTGATGAA    650
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU28940___ys    553 AAGGGCAAGCCGGATGTTTCAATTTTTGAACACTGCCTTAAGCTGATGAA    602

BSNT_04223___    651 TATTGAAAATGACGATGCCATCATGGTCGGCGATAATTTAAATACTGATA    700
                     |||||||||.|||||||||||||||||||||||||||||.||||||||||
BSU28940___ys    603 TATTGAAAAAGACGATGCCATCATGGTCGGCGATAATTTGAATACTGATA    652

BSNT_04223___    701 TTTTAGGCGCTTCAAGAGCCGGAATCAAAACCGTTTGGATCAACCGGACG    750
                     |||||||||||||||||||||||||||||||||||||||||||||||||.
BSU28940___ys    653 TTTTAGGCGCTTCAAGAGCCGGAATCAAAACCGTTTGGATCAACCGGACT    702

BSNT_04223___    751 GATAAGAAAAACGAAACTGACGTAACGCCTGATTACATCATCAGCAGCCT    800
                     |||||||||||||||||||||||||.||||||||||||||||||||||||
BSU28940___ys    703 GATAAGAAAAACGAAACTGACGTAAAGCCTGATTACATCATCAGCAGCCT    752

BSNT_04223___    801 TCATGATTTGTTTCCTATATTAGAGAAATAA    831
                     |||||||||||||||||||||||||||||||
BSU28940___ys    753 TCATGATTTGTTTCCTATATTAGAGAAATAA    783


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