Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05474 and BSU35910

See Amino acid alignment / Visit BSNT_05474 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:24
# Commandline: needle
#    -asequence dna-align/BSNT_05474___rbsR.1.22522.seq
#    -bsequence dna-align/BSU35910___rbsR.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05474___rbsR-BSU35910___rbsR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05474___rbsR-BSU35910___rbsR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05474___rbsR
# 2: BSU35910___rbsR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 990
# Identity:     960/990 (97.0%)
# Similarity:   960/990 (97.0%)
# Gaps:           9/990 ( 0.9%)
# Score: 4716.0
# 
#
#=======================================

BSNT_05474___      1 TTGGCTACAATTAAAGATGTCGCCGGAGCGGCGGGCGTTTCAGTTGCGAC     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU35910___rb      1 TTGGCTACAATTAAAGATGTCGCCGGAGCGGCGGGCGTTTCAGTTGCGAC     50

BSNT_05474___     51 GGTTTCCCGCGTCCTGAATGATAACGGCTATGTACACGAAGTAACGCGAA    100
                     ||||||||||..|||||||||||||||||||||||||||||.||||||||
BSU35910___rb     51 GGTTTCCCGCAACCTGAATGATAACGGCTATGTACACGAAGAAACGCGAA    100

BSNT_05474___    101 CGCGTGTCATAGCGGCGATGGCGAAGCTGAACTATTACCCGAATGAAGTT    150
                     |||||||||||||||||||||||||||||||||||||||||||||||||.
BSU35910___rb    101 CGCGTGTCATAGCGGCGATGGCGAAGCTGAACTATTACCCGAATGAAGTC    150

BSNT_05474___    151 GCCAGATCTCTATATAAAAGAGAATCCCGACTGATCGGACTTTTGCTCCC    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU35910___rb    151 GCCAGATCTCTATATAAAAGAGAATCCCGACTGATCGGACTTTTGCTCCC    200

BSNT_05474___    201 GGATATCACAAACCCTTTCTTCCCCCAGCTTGCCCGCGGTGCGGAGGATG    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU35910___rb    201 GGATATCACAAACCCTTTCTTCCCCCAGCTTGCCCGCGGTGCGGAGGATG    250

BSNT_05474___    251 AATTGAACCGGGAAGGCTATCGCCTTATTTTCGGCAACAGTGACGAGGAA    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU35910___rb    251 AATTGAACCGGGAAGGCTATCGCCTTATTTTCGGCAACAGTGACGAGGAA    300

BSNT_05474___    301 TTGAAAAAAGAACTTGAATACCTTCAAACCTTTAAGCAAAATCATGTCGC    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU35910___rb    301 TTGAAAAAAGAACTTGAATACCTTCAAACCTTTAAGCAAAATCATGTCGC    350

BSNT_05474___    351 AGGCATTATTGCCGCAACGAATTACCCGGATCTCGAGGAATACAGCGGCA    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU35910___rb    351 AGGCATTATTGCCGCAACGAATTACCCGGATCTCGAGGAATACAGCGGCA    400

BSNT_05474___    401 TGAATTATCCCGTTGTTTTTCTGGACAGAACACTGGAAGGGGCTCCTTCT    450
                     ||||||||||.||||||||||||||||||||.||.|||||||||||||||
BSU35910___rb    401 TGAATTATCCAGTTGTTTTTCTGGACAGAACGCTTGAAGGGGCTCCTTCT    450

BSNT_05474___    451 GTGTCCAGTGACGGCTATACAGGAGGAAAGTTAGCCGCTCAGGCTATCAT    500
                     |||||||||||||||||||||||||.||||||||||||.|||||||||||
BSU35910___rb    451 GTGTCCAGTGACGGCTATACAGGAGTAAAGTTAGCCGCCCAGGCTATCAT    500

BSNT_05474___    501 TCACGGAAAAAGCCAGCGCATTACGCTCTTGAGAGGACCCGCTCACCTGC    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU35910___rb    501 TCACGGAAAAAGCCAGCGCATTACGCTCTTGAGAGGACCCGCTCACCTGC    550

BSNT_05474___    551 CGACCGCTCAAGACCGCTTTAATGGCGCTTTGGAAATCTTAAAGCAGGCT    600
                     ||||||||||||||||.|||||.|||||||||||||||||||||||||||
BSU35910___rb    551 CGACCGCTCAAGACCGATTTAACGGCGCTTTGGAAATCTTAAAGCAGGCT    600

BSNT_05474___    601 GAAGTTGAGTTTCAGGTCATTGAGACCGCTTCATTTTCTATTAAAGATGC    650
                     ||||||||.|||||||||||||||||.|||||||||||.|||||||||||
BSU35910___rb    601 GAAGTTGATTTTCAGGTCATTGAGACAGCTTCATTTTCAATTAAAGATGC    650

BSNT_05474___    651 ACAATCGATGGCGAAGGAGCTGTTTGCCGCTTATCCAGCGACAGATGGTG    700
                     ||||||||||||||||||||||||||||.|||||||||||||||||||||
BSU35910___rb    651 ACAATCGATGGCGAAGGAGCTGTTTGCCTCTTATCCAGCGACAGATGGTG    700

BSNT_05474___    701 TAATCGCGAGTAATGATATTCAAGCCGCTGCCGTTTTACATGAAGCATTG    750
                     |.||||||||||||||||||||||||||||||||||||||||||||||||
BSU35910___rb    701 TGATCGCGAGTAATGATATTCAAGCCGCTGCCGTTTTACATGAAGCATTG    750

BSNT_05474___    751 CGGCGCGGAAAAAACGTGCCGGAGGACATTCAAATTATCGGCTATGATGA    800
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU35910___rb    751 CGGCGCGGAAAAAACGTGCCGGAGGACATTCAAATTATCGGCTATGATGA    800

BSNT_05474___    801 CATTCCGCAAAGCGGACTTCTGTTCCCGCCACTTTCTACAATTAAACAGC    850
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU35910___rb    801 CATTCCGCAAAGCGGACTTCTGTTCCCGCCACTTTCTACAATTAAACAGC    850

BSNT_05474___    851 CCGCATATGATATGGGAAGAGAAGCTGCCAAACTGCTTTTGGGCATCATC    900
                     ||||||||||||||||.|.||||||||||||||||||||||||.|||||.
BSU35910___rb    851 CCGCATATGATATGGGGAAAGAAGCTGCCAAACTGCTTTTGGGTATCATT    900

BSNT_05474___    901 AAAAAACAGCCGCTGGCAGAAACGGCAATTCAAATGCCTGTCACCTATAT    950
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU35910___rb    901 AAAAAACAGCCGCTGGCAGAAACGGCAATTCAAATGCCTGTCACCTATAT    950

BSNT_05474___    951 AGGAAGAAAGACGACAAGAAAGGAAGATTACGATGCGTAA    990
                     ||||||||||||||||||||||||||||||.         
BSU35910___rb    951 AGGAAGAAAGACGACAAGAAAGGAAGATTAA---------    981


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