Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06253 and BSU40790

See Amino acid alignment / Visit BSNT_06253 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:55
# Commandline: needle
#    -asequence dna-align/BSNT_06253.1.22522.seq
#    -bsequence dna-align/BSU40790___yyaO.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06253-BSU40790___yyaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06253-BSU40790___yyaO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06253
# 2: BSU40790___yyaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 240
# Identity:     165/240 (68.8%)
# Similarity:   165/240 (68.8%)
# Gaps:          54/240 (22.5%)
# Score: 709.5
# 
#
#=======================================

BSNT_06253         1 ATGCCCACTAACAATAAGCCCAATAGATTAATCGCTGAGAAGTCTCCTTA     50
                     |||||.|.|||.|.|||.||||||||||||||||||||.|||||||||||
BSU40790___yy      1 ATGCCAAATAAAAGTAAACCCAATAGATTAATCGCTGAAAAGTCTCCTTA     50

BSNT_06253        51 TTTACTTCAACATGCTCATAACCCTGTGAATTGGTTCCCTTGGGGAGATG    100
                     ||||||.|||||.||.||.|||||||||.|.||||||||.||||||||.|
BSU40790___yy     51 TTTACTCCAACACGCCCACAACCCTGTGGACTGGTTCCCGTGGGGAGAAG    100

BSNT_06253       101 AAGCATTTGAAAAAGCGAAACGCGAAAACAAGCCTGTTCTGGTCAGCATC    150
                     |||||||||.||||||.|||||||||||||||||.|||||||||||||||
BSU40790___yy    101 AAGCATTTGCAAAAGCAAAACGCGAAAACAAGCCGGTTCTGGTCAGCATC    150

BSNT_06253       151 GGTTATT---CGACTTGTCATTGGTGCCATG-------------------    178
                     |||||||   ||||||||||||||||.|.||                   
BSU40790___yy    151 GGTTATTCGACGACTTGTCATTGGTGGCCTGGGATAATCAAATCGTGTGG    200

BSNT_06253       179 ---TCTCTTAA-----------------------------    186
                        ||..||||                             
BSU40790___yy    201 AACTCCATTAAAAGATAACAGAAGCCATTTTAAACGATAA    240


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