Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00306 and RBAM_002080

See Amino acid alignment / Visit BSNT_00306 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:05
# Commandline: needle
#    -asequence dna-align/BSNT_00306___ybaS.1.9828.seq
#    -bsequence dna-align/RBAM_002080___ybaS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00306___ybaS-RBAM_002080___ybaS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00306___ybaS-RBAM_002080___ybaS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00306___ybaS
# 2: RBAM_002080___ybaS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 998
# Identity:     676/998 (67.7%)
# Similarity:   676/998 (67.7%)
# Gaps:          91/998 ( 9.1%)
# Score: 2355.0
# 
#
#=======================================

BSNT_00306___      1 ------------------------------------------ATGCCGCT      8
                                                               ||||||||
RBAM_002080__      1 ATGATGTGGCTTCAGAAGTTGAACCAAGTGTTGGGGAGAATCATGCCGCT     50

BSNT_00306___      9 GTTGACGCCGACTAGTGTGGTGCTGGGCGTGCTGCTGTCTCAG-TTTTTA     57
                     .|||||.|||.|.|||||||.|..|||.||||||.|.|||||| .|.|.|
RBAM_002080__     51 TTTGACTCCGTCAAGTGTGGCGGCGGGTGTGCTGTTATCTCAGCATATCA    100

BSNT_00306___     58 AATGGGTATGAATGG-----GCTGTGCCTTGGATCTTTGCTTTTATTACG    102
                     ..|||      ||||     ||||||||.|||||.|||||.||||||||.
RBAM_002080__    101 GCTGG------ATGGCCGGCGCTGTGCCGTGGATATTTGCATTTATTACA    144

BSNT_00306___    103 TTTGCAGGCAGTTTGAGCGCGAACTTTCAATCTTTGAGACATGCATTGTC    152
                     |||.|.||||||.||||.||.||.||||||||..|||..|  |||  ||.
RBAM_002080__    145 TTTACGGGCAGTCTGAGTGCCAATTTTCAATCGCTGAAGC--GCA--GTA    190

BSNT_00306___    153 TC----ATCCTCTCCCTATGATTCTTGCACTATTCGTTCTTCATATTTTC    198
                     ||    |.||.|||||.|||||..|.|||.|.||.|||||.|||||||||
RBAM_002080__    191 TCGAGAAGCCGCTCCCGATGATCATGGCATTGTTTGTTCTGCATATTTTC    240

BSNT_00306___    199 ATGCCGCTTTTTGCTTGGGGCAGCGGCCATCTTATATTTAAAGGTGATCC    248
                     |||||..|||||||.|||||.|||||||||||.||.||.|..|||||.||
RBAM_002080__    241 ATGCCTGTTTTTGCATGGGGAAGCGGCCATCTGATTTTCAGCGGTGACCC    290

BSNT_00306___    249 TTTGACGATTAC----CGGTTTAACATTGGCTGTTGTGATTCCTACGGGG    294
                     |||.||..|.||    |.|.|||    |||.|||.||||||||.||.||.
RBAM_002080__    291 TTTAACTGTGACGGGGCTGATTA----TGGGTGTGGTGATTCCGACCGGA    336

BSNT_00306___    295 ATTACAAGCTTGATTTGGGCAGCGATGTACAAAGGGAATGTCGGTTTGAC    344
                     |||||.||.|||||||||||.||||||||.||.|||||||||||.|||||
RBAM_002080__    337 ATTACGAGTTTGATTTGGGCTGCGATGTATAAGGGGAATGTCGGATTGAC    386

BSNT_00306___    345 ACTTTCGATTATTTTAATTGATACTGTGCTGTCACCGCTAATCGTACCGC    394
                     .||.||.|||||..|..|||||||.|||||.||.||..|.|||||||||.
RBAM_002080__    387 GCTGTCTATTATCCTGGTTGATACCGTGCTTTCTCCTTTTATCGTACCGT    436

BSNT_00306___    395 TGAGTCTTTCATTGCTGGCCGGCGCTCAGGTTCACATGGATGTGTGGGGA    444
                     |.||.||.||..|.|||||.||.||..|.|||||.|||||||||||||||
RBAM_002080__    437 TAAGCCTGTCTGTCCTGGCGGGGGCGAATGTTCAGATGGATGTGTGGGGA    486

BSNT_00306___    445 ATGATGAAAGGTCTGATTGTAATGGTCGTGATTCCTTCTTTTTTGGGCAT    494
                     |||||||||||.|||...|..|||||.||.|||||.||..|....||.||
RBAM_002080__    487 ATGATGAAAGGGCTGGCGGAGATGGTGGTAATTCCATCCATCGCAGGGAT    536

BSNT_00306___    495 GCTGTTTAATCAGATGTCATCTCCAGAAAGAACTGCGTCTGTGAGCAGTG    544
                     |.|..|.||.|||.|.||..|.||.|.|||.|||..|.|..|.|||.||.
RBAM_002080__    537 GATAGTCAACCAGTTTTCCCCGCCGGTAAGGACTCAGGCAATAAGCCGTT    586

BSNT_00306___    545 CGCTGTCGCCTTTTTCAAAGCTTTGCTTGATGGCAGTGATTGCGATTAAC    594
                     |||||||.|||||||||||..|.||..|||||...||.|||||.||||||
RBAM_002080__    587 CGCTGTCTCCTTTTTCAAAAATCTGTCTGATGATTGTCATTGCCATTAAC    636

BSNT_00306___    595 AGTTCAGCGATTGCTCCTTATTTCAAATCCATTGATTTGAGATTTGCAGG    644
                     |||||.|..||.||.||.|||.|||....|.|.|||.|.|.||||||.||
RBAM_002080__    637 AGTTCGGAAATCGCGCCGTATGTCACGCACGTGGATATCAAATTTGCGGG    686

BSNT_00306___    645 AATAGCTGTAACGGTATTCTTTATCGCGTTAACAGGCTATGCCGCTGCTT    694
                     .||.||.|..|.||||||.|||||.||..|.||.||.|||||||..||||
RBAM_002080__    687 CATCGCAGGCATGGTATTTTTTATTGCCATGACGGGTTATGCCGTGGCTT    736

BSNT_00306___    695 GGCTGATCGGAAAAATGATGAAAAGGCGGCAAGAGGAAATAGTCTCTCTT    744
                     ||||||||||||.|.|||||||..||.|.||.||.|||||.||.|||||.
RBAM_002080__    737 GGCTGATCGGAAGACTGATGAAGCGGAGCCAGGATGAAATCGTGTCTCTG    786

BSNT_00306___    745 ATATTTACGGGAGGGATGAGGAATATTAGTGCCGGCGCAGTTCTTGCCGT    794
                     ||.|.|||.||.||.|||.|.|||||.||.|||||.||.|||||.|||||
RBAM_002080__    787 ATTTATACAGGGGGCATGCGCAATATCAGCGCCGGAGCCGTTCTCGCCGT    836

BSNT_00306___    795 TACGTTCTTCCCGTCTCAGGTTGCCGTTCCTGTTGTGATCGGCATGCTGT    844
                     ..|.||.||.||||||||.||.||.|||||.||.||.|||||.|||||.|
RBAM_002080__    837 GTCTTTTTTTCCGTCTCAAGTGGCGGTTCCGGTCGTCATCGGGATGCTTT    886

BSNT_00306___    845 TTCAGCAGATATTGGCTGCTTTGTTTGGCTATATGCTGAATCGTTTTGAA    894
                     |||||||.||..|.||.|||||.||.||||||.||||||..||.||||||
RBAM_002080__    887 TTCAGCAAATCCTTGCAGCTTTATTCGGCTATTTGCTGAGACGCTTTGAA    936

BSNT_00306___    895 TTAAAACC---AATGTTGCAGAAAGCATAA------------------    921
                     .|.||.||   ..||.||.||.|.|.|.||                  
RBAM_002080__    937 CTTAAGCCGGTCGTGATGAAGTATGAAAAAAACCGCTCAGCTACGTGA    984


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