Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00478 and RBAM_003000
See
Amino acid alignment /
Visit
BSNT_00478 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:13
# Commandline: needle
# -asequence dna-align/BSNT_00478___yccC.1.9828.seq
# -bsequence dna-align/RBAM_003000___yccC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00478___yccC-RBAM_003000___yccC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00478___yccC-RBAM_003000___yccC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00478___yccC
# 2: RBAM_003000___yccC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1163
# Identity: 798/1163 (68.6%)
# Similarity: 798/1163 (68.6%)
# Gaps: 82/1163 ( 7.1%)
# Score: 2627.5
#
#
#=======================================
BSNT_00478___ 1 ATGAAAAAACAACGAATGCTCGT------ACTTTTTACCGCACTATTGTT 44
||||||||||||...||||.|.| |.||.|.||.|| |.
RBAM_003000__ 1 ATGAAAAAACAATTCATGCCCTTCATTACATTTATCACGGC-------TC 43
BSNT_00478___ 45 TGTTTTT-------ACCGGATGTTCACATTCTCCTGAAACAAAAGAA--- 84
||.|.|| .||||.||.||.||.||||||.||.|.||||||
RBAM_003000__ 44 TGCTCTTCATCGCGGCCGGCTGCTCCCAATCTCCTCAAGCGAAAGAAACA 93
BSNT_00478___ 85 --TCCCCGAA----AGAAAAAACGCAGACACAAAAAGTCTCTTCGGCTTC 128
.|||||.| ||.| ||||.|.||
RBAM_003000__ 94 CCGCCCCGGATGGCAGCA-----GCAGCCCCA------------------ 120
BSNT_00478___ 129 TGCCTCTGAAAAA--AAGGATCTGCCAAACACTAGAATTTTAGCGACAGG 176
|| |||||| |.||| ||.||.||...||.||||.|.||.||.||
RBAM_003000__ 121 -GC----GAAAAAAGACGGA-CTTCCGAATGTTAAAATTCTTGCCACCGG 164
BSNT_00478___ 177 AGGCACGATAGCTGGTGCCGATCAATCGAAAACCTCAACAACTGAATATA 226
.|||||.||.||.||.||.|.||..||.||.||.|||.|.||.||.||.|
RBAM_003000__ 165 CGGCACAATTGCAGGCGCTGCTCCTTCAAAGACGTCAGCTACGGAGTACA 214
BSNT_00478___ 227 AAGCAGGTGTTGTCGGCGTTGAATCACTGATCGAGGCAGTTCCAGAAATG 276
..||.||.|...||||.|||||..|.|||||..||||.|||||.||.||.
RBAM_003000__ 215 CGGCGGGGGCAATCGGAGTTGATGCCCTGATTCAGGCCGTTCCGGAGATA 264
BSNT_00478___ 277 AAGGACATTGCAAACGTCAGCGGCGAGCAGATTGTTAACGTCGGCAGCAC 326
||.||..|.||..|.||.|||||.||.|||.||||.||..|||||||| |
RBAM_003000__ 265 AAAGAGGTCGCGCATGTGAGCGGAGAACAGGTTGTGAATATCGGCAGC-C 313
BSNT_00478___ 327 A-AATATTGATAATAAAATATTGCTGAAGCTGGCGAAACGCATCAACCAC 375
| |||||..||||..|.|.|.|||||||.||.||.|||||..|.|||.|.
RBAM_003000__ 314 AGAATATGAATAACGAGACACTGCTGAAACTTGCAAAACGGGTAAACAAG 363
BSNT_00478___ 376 TTGCTCGCTTCAGATGATGTAGACGGAATCGTCGTGACTCATGGAACAGA 425
.|||||...||.||||||..|||.||.||.|||.|.||.|||||||||||
RBAM_003000__ 364 CTGCTCAAGTCTGATGATACAGATGGCATTGTCATTACACATGGAACAGA 413
BSNT_00478___ 426 TACATTGGAGGAAACCGCTTATTTTTTGAATCTCACCGTGAAAAGTGATA 475
.|||.|.|||||||||||.||.|||.|.|||||.||.||.||||||||.|
RBAM_003000__ 414 CACACTTGAGGAAACCGCCTACTTTCTCAATCTGACGGTCAAAAGTGACA 463
BSNT_00478___ 476 AACCGGTTGTTATTGTCGGTTCGATGAGACCTTCCACAGCCATCAGCGCT 525
|.||.||||||.|.|.|||.||.|||||.||.|||||.||.|||.|.||.
RBAM_003000__ 464 AGCCCGTTGTTGTCGCCGGGTCAATGAGGCCGTCCACGGCGATCGGAGCG 513
BSNT_00478___ 526 GATGGGCCTTCTAACCTGTACAATGCAGTGAAAGTGGCAGGTGCCCCTGA 575
||.|||||.||.|||.|.||.||.||.||.|||...||.|.|||.|||||
RBAM_003000__ 514 GACGGGCCATCCAACTTATATAACGCTGTAAAAACAGCGGCTGCGCCTGA 563
BSNT_00478___ 576 GGCAAAAGGGAAAGGGACGCTTGTTGTTCTTAACGACCGGATTGCCTCAG 625
.||.|||||.||.|||||||||||.||..|.||.|||.|.||.||.||.|
RBAM_003000__ 564 TGCGAAAGGTAAGGGGACGCTTGTCGTATTAAATGACAGAATCGCTTCGG 613
BSNT_00478___ 626 CCCGATATGTCACCAAAACAAACACAACCACAACAGATACATTTAAATCA 675
|.||.|||||.||.|||||.||.||||||.|..|.||.|||||.|||||.
RBAM_003000__ 614 CGCGCTATGTGACAAAAACCAATACAACCGCGGCCGACACATTCAAATCG 663
BSNT_00478___ 676 GATGAAATGGGCTTTGTCGGAACAATTGCCGATGATATCTATTTTAATAA 725
||.||||||||.|.|.|||||||||||||.|||||.||||||||||||||
RBAM_003000__ 664 GAAGAAATGGGTTATATCGGAACAATTGCTGATGACATCTATTTTAATAA 713
BSNT_00478___ 726 TGAGATTACCCGTAAGCATACGAAGGACACGGATTTCTCGGTTTCTAATC 775
....||.|||||.||||||||||||||.||.||||||..|.|...|||.|
RBAM_003000__ 714 CATCATGACCCGAAAGCATACGAAGGATACAGATTTCAAGATAGATAAAC 763
BSNT_00478___ 776 TTGATGAGCTGCCTCAGGTTGACATTATCTATGGATACCAAAATGACGGA 825
|||||.|.|||||.|||||.||.|||||.||.||.||.||||||||||||
RBAM_003000__ 764 TTGATAAACTGCCGCAGGTCGATATTATATACGGCTATCAAAATGACGGA 813
BSNT_00478___ 826 AGCTACCTGTTTGACGCTGCTGTAAAAGCCGGAGCAAAGGGGATTGTATT 875
|||||.||.|||||.|||||.||||||.|.||.||..|.||.|||.|.||
RBAM_003000__ 814 AGCTATCTCTTTGAAGCTGCCGTAAAATCAGGGGCGCAAGGCATTATTTT 863
BSNT_00478___ 876 TGCCGGTTCTGGGAACGGGTCTTTATCTGACGCAGCCGAAAAAGG-GGCG 924
|||.||..|.||.|||||.||..|.|||||.||.||..||||||| |.||
RBAM_003000__ 864 TGCAGGCCCGGGAAACGGCTCAATGTCTGATGCGGCGCAAAAAGGCGCCG 913
BSNT_00478___ 925 GACAG-CGCAGTCAAAAAAGGCGTCACAGTGGTGCGCTCTACCCGCACGG 973
.|.|| || |||||||..||..|..|.||.||.|||||.||..|.||||
RBAM_003000__ 914 TAAAGTCG--GTCAAAAGCGGGCTGGCGGTCGTCCGCTCCACAAGGACGG 961
BSNT_00478___ 974 GAAATGGTGTCGTCACACCAAACCAAGACTATGCGGAAAAGGAC---TTG 1020
||||.||....||.|||||.||.|.|||.||| |||||.||| |||
RBAM_003000__ 962 GAAACGGAACGGTAACACCTAATCGAGAGTAT---GAAAAAGACCATTTG 1008
BSNT_00478___ 1021 CTGGCATCGAACTCTTTAAACCCCCAAAAAGCACGGATGTTGCTGATGCT 1070
...||.||.||||||.|.|||||.||||||||.|||||..|.||||||||
RBAM_003000__ 1009 ACAGCTTCAAACTCTCTCAACCCTCAAAAAGCGCGGATTCTTCTGATGCT 1058
BSNT_00478___ 1071 TGCGCTTACCAAAACAAATGATCCTCAAAAA----ATCCAAGCTTATTTC 1116
||||||.||.|||||..||||.||| || ||.|||.|.||||||
RBAM_003000__ 1059 TGCGCTGACAAAAACGCATGACCCT----AAGCGGATTCAAACCTATTTC 1104
BSNT_00478___ 1117 AATGAGTATTGA- 1128
||||||||.| |
RBAM_003000__ 1105 AATGAGTACT-AG 1116
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.