Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00478 and RBAM_003000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:13
# Commandline: needle
# -asequence pep-align/BSNT_00478___yccC.1.9828.seq
# -bsequence pep-align/RBAM_003000___yccC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00478___yccC-RBAM_003000___yccC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00478___yccC-RBAM_003000___yccC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00478___yccC
# 2: RBAM_003000___yccC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 377
# Identity: 275/377 (72.9%)
# Similarity: 325/377 (86.2%)
# Gaps: 8/377 ( 2.1%)
# Score: 1436.0
#
#
#=======================================
BSNT_00478___ 1 MKKQRM--LVLFTALLFVFTGCSHSPETKESPKEKTQTQKVSSASASEKK 48
||||.| :...|||||:..|||.||:.||:| .::::|:.::|.
RBAM_003000__ 1 MKKQFMPFITFITALLFIAAGCSQSPQAKETP------PRMAAAAPAKKD 44
BSNT_00478___ 49 DLPNTRILATGGTIAGADQSKTSTTEYKAGVVGVESLIEAVPEMKDIANV 98
.|||.:|||||||||||..||||.|||.||.:||::||:||||:|::|:|
RBAM_003000__ 45 GLPNVKILATGGTIAGAAPSKTSATEYTAGAIGVDALIQAVPEIKEVAHV 94
BSNT_00478___ 99 SGEQIVNVGSTNIDNKILLKLAKRINHLLASDDVDGIVVTHGTDTLEETA 148
||||:||:||.|::|:.|||||||:|.||.|||.||||:|||||||||||
RBAM_003000__ 95 SGEQVVNIGSQNMNNETLLKLAKRVNKLLKSDDTDGIVITHGTDTLEETA 144
BSNT_00478___ 149 YFLNLTVKSDKPVVIVGSMRPSTAISADGPSNLYNAVKVAGAPEAKGKGT 198
||||||||||||||:.|||||||||.||||||||||||.|.||:||||||
RBAM_003000__ 145 YFLNLTVKSDKPVVVAGSMRPSTAIGADGPSNLYNAVKTAAAPDAKGKGT 194
BSNT_00478___ 199 LVVLNDRIASARYVTKTNTTTTDTFKSDEMGFVGTIADDIYFNNEITRKH 248
||||||||||||||||||||..|||||:|||::|||||||||||.:||||
RBAM_003000__ 195 LVVLNDRIASARYVTKTNTTAADTFKSEEMGYIGTIADDIYFNNIMTRKH 244
BSNT_00478___ 249 TKDTDFSVSNLDELPQVDIIYGYQNDGSYLFDAAVKAGAKGIVFAGSGNG 298
||||||.:..||:||||||||||||||||||:||||:||:||:|||.|||
RBAM_003000__ 245 TKDTDFKIDKLDKLPQVDIIYGYQNDGSYLFEAAVKSGAQGIIFAGPGNG 294
BSNT_00478___ 299 SLSDAAEKGADSAVKKGVTVVRSTRTGNGVVTPNQDYAEKDLLASNSLNP 348
|:||||:|||..:||.|:.||||||||||.||||::|.:..|.|||||||
RBAM_003000__ 295 SMSDAAQKGAVKSVKSGLAVVRSTRTGNGTVTPNREYEKDHLTASNSLNP 344
BSNT_00478___ 349 QKARMLLMLALTKTNDPQKIQAYFNEY 375
||||:|||||||||:||::||.|||||
RBAM_003000__ 345 QKARILLMLALTKTHDPKRIQTYFNEY 371
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