Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00506 and RBAM_003110

See Amino acid alignment / Visit BSNT_00506 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:15
# Commandline: needle
#    -asequence dna-align/BSNT_00506___ycdH.1.9828.seq
#    -bsequence dna-align/RBAM_003110___ycdH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00506___ycdH-RBAM_003110___ycdH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00506___ycdH-RBAM_003110___ycdH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00506___ycdH
# 2: RBAM_003110___ycdH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 967
# Identity:     761/967 (78.7%)
# Similarity:   761/967 (78.7%)
# Gaps:          14/967 ( 1.4%)
# Score: 2984.0
# 
#
#=======================================

BSNT_00506___      1 ATGTTTAAAAAATGGAGCGGTTTGTTTGTGATTGCAGCGTGCTTTTTATT     50
                     .|||||||||||||||||||..|..||||.|||||.||.|||||||||.|
RBAM_003110__      1 TTGTTTAAAAAATGGAGCGGAATCATTGTCATTGCGGCATGCTTTTTAAT     50

BSNT_00506___     51 AGTTGCAGCATGCGGTAACTCATCAACAAAAGGGTCGGCGG---ATTCAA     97
                     .|..||.|..|||||.||.|||||..|||||||.|||.|.|   .|||||
RBAM_003110__     51 TGCGGCGGGCTGCGGCAATTCATCTTCAAAAGGTTCGTCAGGTTCTTCAA    100

BSNT_00506___     98 AGGGTGATAAACTGCACGTTGTCACAACGTTCTACCCGATGTATGAATTC    147
                     |..|.|..|||||||||||.||.||.||.||.||.||.|||||.||||||
RBAM_003110__    101 AAAGCGGCAAACTGCACGTCGTGACGACCTTTTATCCTATGTACGAATTC    150

BSNT_00506___    148 ACAAAACAAATTGTAAAAGACAAAGGCGATGTGGATCTGTTAATCCCATC    197
                     ||.|||||||||||.|||||||||||||||||.||..|..|.|||||.||
RBAM_003110__    151 ACGAAACAAATTGTCAAAGACAAAGGCGATGTAGACATTCTCATCCCGTC    200

BSNT_00506___    198 TTCCGTTGAACCGCATGATTGGGAACCGACGCCGAAAGACATTGCTAACA    247
                     |||.||.|||||.|||||||||||.|||||||||||.||.||.||...||
RBAM_003110__    201 TTCGGTCGAACCCCATGATTGGGAGCCGACGCCGAAGGATATCGCCGGCA    250

BSNT_00506___    248 TTCAGGATGCTGATTTGTTCGTTTATAATAGTGAATACATGGAGACATGG    297
                     ||||..|.||.|||.|.|||||.||.||.||.|||||.||||||||||||
RBAM_003110__    251 TTCAAAACGCCGATCTTTTCGTATACAACAGCGAATATATGGAGACATGG    300

BSNT_00506___    298 GTTCCGTCAGCTGAAAAAAGCATGGGCCAAGGCCATGC--CGTTTTCGTT    345
                     |||||.|||||.|||||||||||||||...|..|||||  .||||  ||.
RBAM_003110__    301 GTTCCTTCAGCGGAAAAAAGCATGGGCTCTGATCATGCGAAGTTT--GTA    348

BSNT_00506___    346 AATGCAAGCAAAGGTATTGATTTAATGGAAGGCTCTGAAGAAGAACACGA    395
                     ||.||....|||||.|||||.|||.|.|||||.||.||.|||||..|.||
RBAM_003110__    349 AAGGCGTCGAAAGGAATTGACTTACTCGAAGGTTCGGATGAAGAGGAAGA    398

BSNT_00506___    396 AGAGCATGATCATGGGGAGCATGAGCACAGTCATGCA--ATGGATCCTCA    443
                     .||.||||..||.||.|..|||||.||||||||  ||  |||||.|||||
RBAM_003110__    399 GGAACATGGACACGGCGGTCATGACCACAGTCA--CAGCATGGACCCTCA    446

BSNT_00506___    444 CGTATGGCTCAGCCCTGTTCTGGCACAGAAGGAAGTTAAAAATATTACGG    493
                     |||.|||||||||||.|||||.||.||.||.||.||.||||..|||||||
RBAM_003110__    447 CGTGTGGCTCAGCCCGGTTCTTGCGCAAAAAGAGGTCAAAACCATTACGG    496

BSNT_00506___    494 CTCAAATCGTGAAGCAGGACCCGGATAACAAAGAATACTATGAGAAAAAT    543
                     |.||.||.||.||.|||||||||.|.||.||||.||||||||||||||||
RBAM_003110__    497 CGCAGATTGTAAAACAGGACCCGAAGAATAAAGCATACTATGAGAAAAAT    546

BSNT_00506___    544 AGTAAAGAATATATTGCAAAACTGCAGGATCTTGATAAACTATATCGTAC    593
                     ||||||||||||||||||||||||||||||||||||||||||||.|||||
RBAM_003110__    547 AGTAAAGAATATATTGCAAAACTGCAGGATCTTGATAAACTATACCGTAC    596

BSNT_00506___    594 AACCGCAAAAAAAGCGGAGAAAAAAGAATTTATCACGCAGCATACAGCTT    643
                     |||...|||.|||||||.||||||||||||.|||||.|||||..|.||.|
RBAM_003110__    597 AACATTAAATAAAGCGGCGAAAAAAGAATTGATCACACAGCACGCGGCAT    646

BSNT_00506___    644 TTGGCTATCTGGCAAAAGAATACGGCTTGAAGCAGGTTCCGATTGCAGGG    693
                     |..|||||||.||.||||||||||||||.||.||.|||.||||||||||.
RBAM_003110__    647 TCAGCTATCTCGCCAAAGAATACGGCTTAAAACAAGTTGCGATTGCAGGC    696

BSNT_00506___    694 CTGTCACCTGACCAAGAACCGAGCGCAGCCAGCTTGGCAAAGCTGAAAAC    743
                     ||.||.|||||..||||.|||||.||.||||...||||..|.||.|||||
RBAM_003110__    697 CTTTCTCCTGAAGAAGAGCCGAGTGCGGCCAAACTGGCGGATCTCAAAAC    746

BSNT_00506___    744 ATATGCCAAAGAACATAATGTAAAAGTTATTTACTTTGAAGAAATTGCAT    793
                     .|.|||||||.|.|||.||||.||..|.||.||||||||||||.||||||
RBAM_003110__    747 GTTTGCCAAAAAGCATGATGTGAAGATCATCTACTTTGAAGAAGTTGCAT    796

BSNT_00506___    794 CCTCAAAGGTCGCAGATACGCTCGCCAGTGAAATCGGCGCGAAGACAGAA    843
                     |..|.||.||.||||||||.||.|||.||||||||||||||||.||.|||
RBAM_003110__    797 CGCCTAAAGTTGCAGATACACTTGCCGGTGAAATCGGCGCGAAAACGGAA    846

BSNT_00506___    844 GTGCTGAATACACTGGAAGGCTTGAGCAAAGAAGAACAGGATAAAGGTTT    893
                     |||||.||||||||||||||.||.|||.||.||||||.|||||||||..|
RBAM_003110__    847 GTGCTCAATACACTGGAAGGTTTAAGCCAAAAAGAACGGGATAAAGGCAT    896

BSNT_00506___    894 AGGGTATATCGACATTATGAAACAAAACCTCGATGCCCTGAAAGATTCAC    943
                     .||.|||||||||||||||.|..|||||||.|||||.|||||||||||.|
RBAM_003110__    897 CGGTTATATCGACATTATGGAGAAAAACCTTGATGCACTGAAAGATTCGC    946

BSNT_00506___    944 TATTGGTTAAATCATAA    960
                     ||||||||||||.|   
RBAM_003110__    947 TATTGGTTAAATAA---    960


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00506 and RBAM_003110

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
