Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00506 and RBAM_003110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:15
# Commandline: needle
# -asequence pep-align/BSNT_00506___ycdH.1.9828.seq
# -bsequence pep-align/RBAM_003110___ycdH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00506___ycdH-RBAM_003110___ycdH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00506___ycdH-RBAM_003110___ycdH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00506___ycdH
# 2: RBAM_003110___ycdH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 320
# Identity: 267/320 (83.4%)
# Similarity: 290/320 (90.6%)
# Gaps: 2/320 ( 0.6%)
# Score: 1404.0
#
#
#=======================================
BSNT_00506___ 1 MFKKWSGLFVIAACFLLVAACGNSSTKGSA-DSKGDKLHVVTTFYPMYEF 49
|||||||:.|||||||:.|.|||||:|||: .||..||||||||||||||
RBAM_003110__ 1 MFKKWSGIIVIAACFLIAAGCGNSSSKGSSGSSKSGKLHVVTTFYPMYEF 50
BSNT_00506___ 50 TKQIVKDKGDVDLLIPSSVEPHDWEPTPKDIANIQDADLFVYNSEYMETW 99
||||||||||||:|||||||||||||||||||.||:||||||||||||||
RBAM_003110__ 51 TKQIVKDKGDVDILIPSSVEPHDWEPTPKDIAGIQNADLFVYNSEYMETW 100
BSNT_00506___ 100 VPSAEKSMGQGHAVFVNASKGIDLMEGSEEEHEEHDHGEHEHSHAMDPHV 149
|||||||||..||.||.|||||||:|||:||.|||.||.|:|||:|||||
RBAM_003110__ 101 VPSAEKSMGSDHAKFVKASKGIDLLEGSDEEEEEHGHGGHDHSHSMDPHV 150
BSNT_00506___ 150 WLSPVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTT 199
||||||||||||.||||||||||.||.|||||||||||||||||||||||
RBAM_003110__ 151 WLSPVLAQKEVKTITAQIVKQDPKNKAYYEKNSKEYIAKLQDLDKLYRTT 200
BSNT_00506___ 200 AKKAEKKEFITQHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTY 249
..||.|||.||||.||.|||||||||||.||||||::|||||.||.|||:
RBAM_003110__ 201 LNKAAKKELITQHAAFSYLAKEYGLKQVAIAGLSPEEEPSAAKLADLKTF 250
BSNT_00506___ 250 AKEHNVKVIYFEEIASSKVADTLASEIGAKTEVLNTLEGLSKEEQDKGLG 299
||:|:||:|||||:||.|||||||.||||||||||||||||::|:|||:|
RBAM_003110__ 251 AKKHDVKIIYFEEVASPKVADTLAGEIGAKTEVLNTLEGLSQKERDKGIG 300
BSNT_00506___ 300 YIDIMKQNLDALKDSLLVKS 319
|||||::||||||||||||
RBAM_003110__ 301 YIDIMEKNLDALKDSLLVK- 319
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