Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00567 and RBAM_003430

See Amino acid alignment / Visit BSNT_00567 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:18
# Commandline: needle
#    -asequence dna-align/BSNT_00567___ycgL.1.9828.seq
#    -bsequence dna-align/RBAM_003430___ycgL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00567___ycgL-RBAM_003430___ycgL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00567___ycgL-RBAM_003430___ycgL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00567___ycgL
# 2: RBAM_003430___ycgL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 910
# Identity:     555/910 (61.0%)
# Similarity:   555/910 (61.0%)
# Gaps:         173/910 (19.0%)
# Score: 1752.5
# 
#
#=======================================

BSNT_00567___      1 GTGAAAAGCCGCCGCATATCATCAGGCGGTTTTTTTCTGCAAACTGCCGG     50
                                                                       
RBAM_003430__      0 --------------------------------------------------      0

BSNT_00567___     51 AATGAGAACAGACTGGAGACGAATAGATATGAAACAAAGAATCATTGATG    100
                                                 |||||||||||.|||||.||.|
RBAM_003430__      1 ----------------------------ATGAAACAAAGGATCATCGAAG     22

BSNT_00567___    101 AATTAAAACGGATCG-AGCAGTCA-TATGGAGTCAAAATCGTGTATGCCG    148
                     ||||||||||.||.| ||||  || .|.||.|||||..|..|.||.||||
RBAM_003430__     23 AATTAAAACGAATTGAAGCA--CAGCACGGCGTCAAGGTGCTTTACGCCG     70

BSNT_00567___    149 TCGAGTCAGGAAGCCGCGCATGGGGATTTCCGTC--GCAGGATAGTGATT    196
                     |.||.|||||.||||||||||||||.||||||||  ||  ||.||.||.|
RBAM_003430__     71 TAGAATCAGGGAGCCGCGCATGGGGGTTTCCGTCAAGC--GACAGCGACT    118

BSNT_00567___    197 ACGACGTCCGCTTTATTTATGTGCCGAAAAAGGAGTGGTATTTTTCAATT    246
                     ||||.||.||.|||.||||||||||||||||.||.|||||.|||||.||.
RBAM_003430__    119 ACGATGTGCGGTTTCTTTATGTGCCGAAAAAAGAATGGTACTTTTCGATC    168

BSNT_00567___    247 GAGCAGGAGCGTGATGTCATTGAGGAACCGATTCACGATTTGCTGGATAT    296
                     ||.|.|.|..|.||||||||.||.||.||||||||.||..||||.||.||
RBAM_003430__    169 GAACCGCATAGGGATGTCATAGAAGAGCCGATTCATGACATGCTTGACAT    218

BSNT_00567___    297 CAGCGGCTGGGAGCTGAGAAAAACGCTTAGGCTTTTCAAAAAGTCAAACC    346
                     ||||||||||||.|||||||||.|||||||||||||.|||||.|||||.|
RBAM_003430__    219 CAGCGGCTGGGAACTGAGAAAAGCGCTTAGGCTTTTTAAAAAATCAAATC    268

BSNT_00567___    347 CTCCGCTCCTCGAATGGCTGTCCTCAGACATTGTGTATTACGAAGCATTT    396
                     |.||.||..|.||||||||.||.||.||.||..|.|||||.|||||.||.
RBAM_003430__    269 CGCCTCTTTTGGAATGGCTCTCTTCTGAGATGATCTATTATGAAGCTTTC    318

BSNT_00567___    397 ACGACCGCAGAGCAGTTAAGAAAAC------TGCGCACGGAGGCATTTAA    440
                     .|..|.||.||..||.|..||||||      |.|||      ||.|||..
RBAM_003430__    319 TCAGCGGCTGAAAAGCTTCGAAAACTAAAAATCCGC------GCCTTTTC    362

BSNT_00567___    441 GCCTGAAGCAAGCGTGTATCACTATATCAATATGGCGAGAAGGAACGTCA    490
                     |||||||||..||.|.|||||.|||.||||||||||.|.|.||||.|..|
RBAM_003430__    363 GCCTGAAGCCGGCATCTATCATTATCTCAATATGGCAAAACGGAATGAAA    412

BSNT_00567___    491 AAGATTATCTAC--AA-----GGACA-AGAGGTCAAAATTAAAAAGTACT    532
                     ||        ||  ||     ||.|| .||.||.||.|||||||||||.|
RBAM_003430__    413 AA--------ACGGAATTGCGGGGCAGTGAAGTAAAGATTAAAAAGTATT    454

BSNT_00567___    533 TCTACGTTCTTCGGCCTATTTTGGCCTGCCAATGGATTGAAAAGCACGGA    582
                     |.||.|||||.||.|||.|..|.||||||..|||||||||||.|..|||.
RBAM_003430__    455 TTTATGTTCTGCGTCCTCTCCTTGCCTGCAGATGGATTGAAACGTTCGGC    504

BSNT_00567___    583 ACCATACCGCCAATGGACTT-----TACTG----------TTTTGATGAA    617
                     .||.|||||||.|||...||     |||||          |.||||.|.|
RBAM_003430__    505 TCCGTACCGCCGATGTCATTTCCCGTACTGGCCGATGCCTTATTGACGGA    554

BSNT_00567___    618 TGAACTTGTTCGTGAACCCGAGCTGAAGGCTGAAATGGAAACCTTGCTTG    667
                     ||||               |.|||.|...|||||||..|.||..|||||.
RBAM_003430__    555 TGAA---------------GCGCTCATTTCTGAAATCAATACACTGCTTA    589

BSNT_00567___    668 AACGGAAAAGAAGAGGGGAAGAGCTTGACCTC--GAAGCAAGAA--TCGA    713
                     .|.||||||.|||.||..|.|||||.|  |||  |||.|.||||  .|||
RBAM_003430__    590 CAAGGAAAAAAAGCGGTCAGGAGCTGG--CTCCGGAACCCAGAAATACGA    637

BSNT_00567___    714 TGTAATTCACCAATTCATTGAAACGGAAATCGAAAGAATCATGGAAGC--    761
                       |.|||||...|||.||.|||...|||||.|||.|.|||  ||  ||  
RBAM_003430__    638 --TCATTCATGCATTTATAGAAGAAGAAATAGAACGCATC--GG--GCAC    681

BSNT_00567___    762 ---GGCAAAA-GAACTGAAGGCAGAGAAAAAAGATATGACATCTGAATTG    807
                        |.||||| ||.|..||.||  .||||...||.||.||....|||.||
RBAM_003430__    682 TATGTCAAAACGATCAAAACGC--CGAAACCTGACATAACGGAGGAACTG    729

BSNT_00567___    808 AACCGTTTGCTTTTGA---ATACGGTTGAAGAAGTGTGGAAGG---ATGG    851
                     ||.||   |||.||||   |.||.||.|||||.|.||||..||   |.||
RBAM_003430__    730 AATCG---GCTATTGATTCAGACCGTCGAAGAGGCGTGGGGGGAAAAAGG    776

BSNT_00567___    852 AGGAAGCTGA    861
                     .||||..|||
RBAM_003430__    777 CGGAAATTGA    786


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