Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00567 and RBAM_003430

See DNA alignment / Visit BSNT_00567 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:18
# Commandline: needle
#    -asequence pep-align/BSNT_00567___ycgL.1.9828.seq
#    -bsequence pep-align/RBAM_003430___ycgL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00567___ycgL-RBAM_003430___ycgL.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00567___ycgL-RBAM_003430___ycgL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00567___ycgL
# 2: RBAM_003430___ycgL
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 287
# Identity:     179/287 (62.4%)
# Similarity:   211/287 (73.5%)
# Gaps:          27/287 ( 9.4%)
# Score: 961.0
# 
#
#=======================================

BSNT_00567___      1 MKSRRISSGGFFLQTAGMRTDWRRIDMKQRIIDELKRIEQSYGVKIVYAV     50
                                               ||||||:||||||..:|||::|||
RBAM_003430__      1 --------------------------MKQRIIEELKRIEAQHGVKVLYAV     24

BSNT_00567___     51 ESGSRAWGFPSQDSDYDVRFIYVPKKEWYFSIEQERDVIEEPIHDLLDIS    100
                     |||||||||||.||||||||:||||||||||||..||||||||||:||||
RBAM_003430__     25 ESGSRAWGFPSSDSDYDVRFLYVPKKEWYFSIEPHRDVIEEPIHDMLDIS     74

BSNT_00567___    101 GWELRKTLRLFKKSNPPLLEWLSSDIVYYEAFTTAEQLRKLRTEAFKPEA    150
                     ||||||.|||||||||||||||||:::|||||:.||:||||:..||.|||
RBAM_003430__     75 GWELRKALRLFKKSNPPLLEWLSSEMIYYEAFSAAEKLRKLKIRAFSPEA    124

BSNT_00567___    151 SVYHYINMARRNVKDYLQGQEVKIKKYFYVLRPILACQWIEKHGTIPPMD    200
                     .:|||:|||:||.|..|:|.|||||||||||||:|||:|||..|::|||.
RBAM_003430__    125 GIYHYLNMAKRNEKTELRGSEVKIKKYFYVLRPLLACRWIETFGSVPPMS    174

BSNT_00567___    201 FTVLMNELVREPELKAEMETLLERKRRGEELDLEARIDVIHQFIETEIER    250
                     |.||.:.|:.:..|.:|:.|||.||:.|:||..|.|..:||.|||.||||
RBAM_003430__    175 FPVLADALLTDEALISEINTLLTRKKSGQELAPEPRNTIIHAFIEEEIER    224

BSNT_00567___    251 IMEAAKELKAEKKDMTSELNRLLLNTVEEVWKDGGS-    286
                     |....|.:|..|.|:|.||||||:.||||.|.:.|. 
RBAM_003430__    225 IGHYVKTIKTPKPDITEELNRLLIQTVEEAWGEKGGN    261


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