Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00568 and RBAM_003440
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:18
# Commandline: needle
# -asequence dna-align/BSNT_00568___ycgM.1.9828.seq
# -bsequence dna-align/RBAM_003440___ycgM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00568___ycgM-RBAM_003440___ycgM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00568___ycgM-RBAM_003440___ycgM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00568___ycgM
# 2: RBAM_003440___ycgM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 997
# Identity: 730/997 (73.2%)
# Similarity: 730/997 (73.2%)
# Gaps: 104/997 (10.4%)
# Score: 2922.0
#
#
#=======================================
BSNT_00568___ 0 -------------------------------------------------- 0
RBAM_003440__ 1 ATGTTTTGTCCATTTACAATAGACTCATACAAATACTTCTTAGATTGCGG 50
BSNT_00568___ 1 ----------------GTGATCACAAGAGATTTTTTCTTATTTTTATCCA 34
|||||.||||||||||||||||||||||||||||
RBAM_003440__ 51 GGTGTTAAGGTTGGAAGTGATTACAAGAGATTTTTTCTTATTTTTATCCA 100
BSNT_00568___ 35 AAAGCGGCTTTCTCAATAAAATGGCGAGGAACTGGGGAAGCCGGGTAGCA 84
|.|||.|||||||||||||.||||||.|.|.||||||||||||.||.|||
RBAM_003440__ 101 AGAGCAGCTTTCTCAATAAGATGGCGCGAAGCTGGGGAAGCCGTGTGGCA 150
BSNT_00568___ 85 GCGGGTAAAATTATCGGCGGGAAT-GACTTTAACAGTTCAATCCCGACCA 133
||.||.|||||.||||| .||||| ||.||...||||||.||||||||.|
RBAM_003440__ 151 GCCGGCAAAATCATCGG-AGGAATGGATTTCCGCAGTTCTATCCCGACAA 199
BSNT_00568___ 134 TTCGACAGCTTAACAGCCAAGGCTTGTCAGTTACTGTCGATCATTTAGGC 183
|.|||||..|.||||||||.||..||||||||||||||||||||||.||.
RBAM_003440__ 200 TCCGACATTTGAACAGCCAGGGGCTGTCAGTTACTGTCGATCATTTGGGG 249
BSNT_00568___ 184 GAGTTTGTGAACAGCGCCGAGGTCGCACGGGAGCGTACGGAAGAGTGCAT 233
||.|||||.|||||||..||.|||||....||.||.||.||.||||||||
RBAM_003440__ 250 GAATTTGTCAACAGCGGTGATGTCGCGAAAGAACGCACCGAGGAGTGCAT 299
BSNT_00568___ 234 TCAAACCATTGCGACCATCGCGGATCAGGAGCTGAACTCACACGTTTCTT 283
.||.|||||.||....|||||.|||.|..|||||||.||.||.||.||.|
RBAM_003440__ 300 GCAGACCATCGCCTTAATCGCTGATGAACAGCTGAATTCCCAAGTGTCAT 349
BSNT_00568___ 284 TAAAAATGACGTCTTTAGGTTTGGATATAGATATGGATTTGGTGTATGAA 333
||||||||||||||||||||.|.|||||||||.|.|||.|.||.||||||
RBAM_003440__ 350 TAAAAATGACGTCTTTAGGTCTTGATATAGATCTCGATCTCGTCTATGAA 399
BSNT_00568___ 334 AATATGACAAAAATCCTTCAGACGGCCGAGAAACATAAAATCATGGTCAC 383
||||||||.||||||||.|||||.||.||.|||||||||.|||||||.||
RBAM_003440__ 400 AATATGACGAAAATCCTCCAGACAGCTGAAAAACATAAAGTCATGGTGAC 449
BSNT_00568___ 384 CATTGACATGGAGGACGAAGTCAGATGCCAGAAAACGCTTGATATTTTCA 433
.|||||||||||.||.|||...|||||||||||.|||||.|||||.||.|
RBAM_003440__ 450 GATTGACATGGAAGATGAAACGAGATGCCAGAAGACGCTGGATATCTTTA 499
BSNT_00568___ 434 AAGATTTCAGAAAGAAATACGAGC----------ATGTGAGCACAGTGCT 473
||||.|||.| |||| ||||.|||||.|||.|
RBAM_003440__ 500 AAGACTTCCG----------GAGCCGGTATGAATATGTAAGCACCGTGGT 539
BSNT_00568___ 474 GCAAGCCTATCTGTACCGGACGGAAAAAGACATTGACGATTTGGATTCTT 523
|||.||||||||||||.|.||||||||.||..||||.|| |.|
RBAM_003440__ 540 GCAGGCCTATCTGTACAGAACGGAAAAGGATCTTGATGA--------CCT 581
BSNT_00568___ 524 --------TAAACCCGTTCCTTCGCCTTGTAAAAGGAGCTTATAAAGAAT 565
|.||.|||||.||.||.|||||.|||||.||.||||||||||
RBAM_003440__ 582 CAGCCCGCTGAATCCGTTTCTGCGGCTTGTCAAAGGGGCCTATAAAGAAT 631
BSNT_00568___ 566 CAGAAAAAGTAGCTTTCCCGGAGAAAAGCGATGTCGATGAAAATTACAAA 615
|.|||||.||.||.|..||.||.||||||||.||||||||||||||.|||
RBAM_003440__ 632 CGGAAAAGGTGGCCTATCCTGAAAAAAGCGACGTCGATGAAAATTATAAA 681
BSNT_00568___ 616 AAAATCATCCGAAAGCAGCTCTTAAACGGTCACTATACAGCGATTGCCAC 665
|.|.|||||||.||.|||||.|||||.||.||.|||||.||..|||||||
RBAM_003440__ 682 AGACTCATCCGCAAACAGCTTTTAAAAGGACATTATACGGCAGTTGCCAC 731
BSNT_00568___ 666 ACATGACGACAAAATGATCGACTTTACAAAGCAGCTTGCCAAGGAACATG 715
.|||||.||||||||||||||.||||||||.|||||||||||.||.||.|
RBAM_003440__ 732 GCATGATGACAAAATGATCGAGTTTACAAAACAGCTTGCCAAAGAGCACG 781
BSNT_00568___ 716 GCATTGCCAATGACAAGTTTGAATTTCAGATGCTGTACGGCATGCGGTCG 765
|||||.|.||.|||...|||||.|||||||||||||||||||||||.|||
RBAM_003440__ 782 GCATTCCAAACGACCGTTTTGAGTTTCAGATGCTGTACGGCATGCGCTCG 831
BSNT_00568___ 766 CAAACCCAGCTCAGCCTCGTAAAAGAAGGTTATAACATGAGAGTCTACCT 815
|||||||||||||||.|.||..|||||||.||...|||||||||||||||
RBAM_003440__ 832 CAAACCCAGCTCAGCTTGGTGGAAGAAGGATACCGCATGAGAGTCTACCT 881
BSNT_00568___ 816 GCCATACGGCGAGGATTGGTACGGCTATTTTATGAGACGCCTTGCAGAAC 865
|||.|||||.||.||.||||||||.|||||.||||||||.||.||.||||
RBAM_003440__ 882 GCCTTACGGGGATGACTGGTACGGTTATTTCATGAGACGGCTCGCCGAAC 931
BSNT_00568___ 866 GTCCGTCAAACATTGCATTTGCTTTCAAAGGAATGACAAAGAAGTAA 912
|.||.||||||||.|||||.||.||.|||||.|||||.|||||||||
RBAM_003440__ 932 GCCCCTCAAACATCGCATTCGCCTTTAAAGGGATGACTAAGAAGTAA 978
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