Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00568 and RBAM_003440

See DNA alignment / Visit BSNT_00568 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:18
# Commandline: needle
#    -asequence pep-align/BSNT_00568___ycgM.1.9828.seq
#    -bsequence pep-align/RBAM_003440___ycgM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00568___ycgM-RBAM_003440___ycgM.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00568___ycgM-RBAM_003440___ycgM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00568___ycgM
# 2: RBAM_003440___ycgM
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 325
# Identity:     268/325 (82.5%)
# Similarity:   289/325 (88.9%)
# Gaps:          22/325 ( 6.8%)
# Score: 1416.0
# 
#
#=======================================

BSNT_00568___      1 ----------------------MITRDFFLFLSKSGFLNKMARNWGSRVA     28
                                           :||||||||||||.|||||||:||||||
RBAM_003440__      1 MFCPFTIDSYKYFLDCGVLRLEVITRDFFLFLSKSSFLNKMARSWGSRVA     50

BSNT_00568___     29 AGKIIGGNDFNSSIPTIRQLNSQGLSVTVDHLGEFVNSAEVARERTEECI     78
                     |||||||.||.|||||||.|||||||||||||||||||.:||:||||||:
RBAM_003440__     51 AGKIIGGMDFRSSIPTIRHLNSQGLSVTVDHLGEFVNSGDVAKERTEECM    100

BSNT_00568___     79 QTIATIADQELNSHVSLKMTSLGLDIDMDLVYENMTKILQTAEKHKIMVT    128
                     ||||.|||::|||.|||||||||||||:||||||||||||||||||:|||
RBAM_003440__    101 QTIALIADEQLNSQVSLKMTSLGLDIDLDLVYENMTKILQTAEKHKVMVT    150

BSNT_00568___    129 IDMEDEVRCQKTLDIFKDFRKKYEHVSTVLQAYLYRTEKDIDDLDSLNPF    178
                     ||||||.|||||||||||||.:||:||||:||||||||||:|||..||||
RBAM_003440__    151 IDMEDETRCQKTLDIFKDFRSRYEYVSTVVQAYLYRTEKDLDDLSPLNPF    200

BSNT_00568___    179 LRLVKGAYKESEKVAFPEKSDVDENYKKIIRKQLLNGHYTAIATHDDKMI    228
                     |||||||||||||||:|||||||||||::||||||.|||||:||||||||
RBAM_003440__    201 LRLVKGAYKESEKVAYPEKSDVDENYKRLIRKQLLKGHYTAVATHDDKMI    250

BSNT_00568___    229 DFTKQLAKEHGIANDKFEFQMLYGMRSQTQLSLVKEGYNMRVYLPYGEDW    278
                     :|||||||||||.||:||||||||||||||||||:|||.||||||||:||
RBAM_003440__    251 EFTKQLAKEHGIPNDRFEFQMLYGMRSQTQLSLVEEGYRMRVYLPYGDDW    300

BSNT_00568___    279 YGYFMRRLAERPSNIAFAFKGMTKK    303
                     |||||||||||||||||||||||||
RBAM_003440__    301 YGYFMRRLAERPSNIAFAFKGMTKK    325


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