Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00602 and RBAM_003580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:21
# Commandline: needle
# -asequence dna-align/BSNT_00602___yckD.1.9828.seq
# -bsequence dna-align/RBAM_003580___yckD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00602___yckD-RBAM_003580___yckD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00602___yckD-RBAM_003580___yckD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00602___yckD
# 2: RBAM_003580___yckD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 355
# Identity: 230/355 (64.8%)
# Similarity: 230/355 (64.8%)
# Gaps: 53/355 (14.9%)
# Score: 693.0
#
#
#=======================================
BSNT_00602___ 1 ATGAAACGAATAAC--CATTAACATCATAACAATG-----TTCATTGCAA 43
||||| ||.|.| ||||..|.| ||.| || ||||||.||.
RBAM_003580__ 1 ATGAA---AAAAGCTGCATTGTCTT--TAGC--TGCGTTTTTCATTACAG 43
BSNT_00602___ 44 CGACTGTCATTTCTC--TGACCGGTACAGCTGAGGCCGCTG----AAAAA 87
|.|..|| ||||.| || ||||.|| |.|||||.| |||||
RBAM_003580__ 44 CAATGGT--TTTCACAATG-CCGGCAC-----ACGCCGCCGGAACAAAAA 85
BSNT_00602___ 88 CAGCAGCAGCCTCCCGCAAATGTTACACTGACAGATCAGCAAAAGAAAGA 137
.||||.|..| ||||| ||||.||.||.|||||.||.|||||
RBAM_003580__ 86 -------TGCCTTCAAC-AATGT--CACTCACGGAACAGCAGAAAAAAGA 125
BSNT_00602___ 138 GGTTGAACAACTGGAAGCAGAGATTCTTAAAAAGCGCAAAGACGTAATCT 187
..|||||..|||.|||..|||..|.||..||||.||.|||.|.||.||.|
RBAM_003580__ 126 AATTGAATCACTTGAAAAAGAAGTGCTCGAAAAACGAAAACATGTTATAT 175
BSNT_00602___ 188 CAAAGTATGTACAATACGGTGTCCTGCCTAAAGAAAGAGGAGAACACATT 237
|.||.|||||..|.|||||.||||||||.|||||||.||.||||||.|||
RBAM_003580__ 176 CCAAATATGTTGAGTACGGGGTCCTGCCGAAAGAAAAAGCAGAACATATT 225
BSNT_00602___ 238 AAAAATCACTTGGACAAACACTTTGAAATGATGAAACAAAACGGCTTTGT 287
|||.|.||..||||||..|.||||.|.||||||||||||||.||.|||||
RBAM_003580__ 226 AAACAGCATATGGACAGGCGCTTTAACATGATGAAACAAAATGGGTTTGT 275
BSNT_00602___ 288 TCCAAAGCACCATCCTCATCCGCATAAATTTGAAAAAAGACA-------- 329
.||.||| ||||..||.||||||||.|||||..|.||
RBAM_003580__ 276 CCCGAAG------CCTCCGCCTCATAAATTGGAAAAGCGGCATCATCATT 319
BSNT_00602___ 330 -TTAA 333
||||
RBAM_003580__ 320 CTTAA 324
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