Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00602 and RBAM_003580

See DNA alignment / Visit BSNT_00602 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:20
# Commandline: needle
#    -asequence pep-align/BSNT_00602___yckD.1.9828.seq
#    -bsequence pep-align/RBAM_003580___yckD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00602___yckD-RBAM_003580___yckD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00602___yckD-RBAM_003580___yckD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00602___yckD
# 2: RBAM_003580___yckD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 113
# Identity:      60/113 (53.1%)
# Similarity:    78/113 (69.0%)
# Gaps:           9/113 ( 8.0%)
# Score: 316.0
# 
#
#=======================================

BSNT_00602___      1 MKRITINIITMFIATTVISLTGTAEAAEKQQQPPANVTLTDQQKKEVEQL     50
                     ||:..:::...||...|.::...|...:.    |:.::||:|||||:|.|
RBAM_003580__      1 MKKAALSLAAFFITAMVFTMPAHAAGTKM----PSTMSLTEQQKKEIESL     46

BSNT_00602___     51 EAEILKKRKDVISKYVQYGVLPKERGEHIKNHLDKHFEMMKQNGFVPKHH    100
                     |.|:|:|||.||||||:|||||||:.||||.|:|:.|.||||||||||  
RBAM_003580__     47 EKEVLEKRKHVISKYVEYGVLPKEKAEHIKQHMDRRFNMMKQNGFVPK--     94

BSNT_00602___    101 PHPHKFEKRH---    110
                     |.|||.||||   
RBAM_003580__     95 PPPHKLEKRHHHS    107


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