Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00657 and RBAM_003860

See Amino acid alignment / Visit BSNT_00657 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:24
# Commandline: needle
#    -asequence dna-align/BSNT_00657___yczF.1.9828.seq
#    -bsequence dna-align/RBAM_003860___yczF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00657___yczF-RBAM_003860___yczF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00657___yczF-RBAM_003860___yczF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00657___yczF
# 2: RBAM_003860___yczF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 250
# Identity:     149/250 (59.6%)
# Similarity:   149/250 (59.6%)
# Gaps:          56/250 (22.4%)
# Score: 423.5
# 
#
#=======================================

BSNT_00657___      1 ATGAAGATATTGGGCGTGACCGGAGTCATATTAATTTGTTTATTAGCT--     48
                     |||||.||||||||       ||..||||     |||.|||..|.|||  
RBAM_003860__      1 ATGAAAATATTGGG-------GGTTTCAT-----TTTTTTTGCTGGCTGC     38

BSNT_00657___     49 ----------ATTTCTGTGTTGATGGACATGCTTCAAGGGTTCAGTTTAA     88
                               |||||.||...|||.||.|||||.|||||.||||||||  
RBAM_003860__     39 CTGTCTGATCATTTCAGTAACGATAGATATGCTGCAAGGTTTCAGTTT--     86

BSNT_00657___     89 CAA--AAGCCGTTTATAACAATATGTCCAGC-TTTAAGATGACAACATTT    135
                     |.|  .|||.||..|.|||||..||||| || |||||..||||.||.||.
RBAM_003860__     87 CTATGGAGCGGTCCAAAACAACCTGTCC-GCTTTTAAATTGACCACCTTC    135

BSNT_00657___    136 GCGGAATGGGTCGTGCTTTTATTTTTTG------TTTTAGTACTTGTGAG    179
                     .|.||||||.|..||||.||.||.||.|      |||||      .|.||
RBAM_003860__    136 TCAGAATGGCTGATGCTGTTTTTATTCGCCCTCTTTTTA------ATCAG    179

BSNT_00657___    180 AGAAATCTACATGATC------TATAAATC-GAAAAAAAAGAACCCCTAG    222
                     ||||      ||||||      |||||||| |..||||||||..||..| 
RBAM_003860__    180 AGAA------ATGATCGTTTTATATAAATCAGGTAAAAAAGATGCCTGA-    222


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.