Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00716 and RBAM_004320

See Amino acid alignment / Visit BSNT_00716 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:29
# Commandline: needle
#    -asequence dna-align/BSNT_00716___kipA.1.9828.seq
#    -bsequence dna-align/RBAM_004320___kipA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00716___kipA-RBAM_004320___kipA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00716___kipA-RBAM_004320___kipA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00716___kipA
# 2: RBAM_004320___kipA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1056
# Identity:     739/1056 (70.0%)
# Similarity:   739/1056 (70.0%)
# Gaps:          84/1056 ( 8.0%)
# Score: 2531.5
# 
#
#=======================================

BSNT_00716___      1 TTGAGCATGAAAGTATTAAAGCCCGGACTGCTCACAACGGTTCAGGATAT     50
                     .||||.||||||||..||||||||||.||..|.||.|||||||||||.|.
RBAM_004320__      1 ATGAGTATGAAAGTGGTAAAGCCCGGTCTCTTGACGACGGTTCAGGACAC     50

BSNT_00716___     51 AGGCAGAACGGGTTACCAAAAATACGGCGTTCTGGCCAGCGGCGCTATGG    100
                     .||..|.|||||.||.||.||||||||.||.||||..||||||||.||||
RBAM_004320__     51 GGGGCGGACGGGATATCAGAAATACGGTGTGCTGGGAAGCGGCGCAATGG    100

BSNT_00716___    101 ACACGGTATCACTGCGCATTGCCAAT-TTGTTGATAGGAAACGGTGAAAA    149
                     |.|||.|.|||||||||||.|||||| ||.||| ..|||||....|||||
RBAM_004320__    101 ATACGATCTCACTGCGCATCGCCAATCTTCTTG-CCGGAAATCAAGAAAA    149

BSNT_00716___    150 TGAAGCAGGTCTCGAAATAACGATGATGGGGCCCGGTCCGTCGTTTCATT    199
                     .||.||.||.||.|||||.|||.|.|||||||||||.||.||.|||.|.|
RBAM_004320__    150 AGAGGCGGGACTGGAAATTACGCTCATGGGGCCCGGGCCTTCCTTTGAAT    199

BSNT_00716___    200 TTTCAAAACAGACACTG-----ATTGCTGTGACAGGGGCGGACTTCACGC    244
                     |||||.|||     |||     |||||.||.||.||.||.||.|||.|.|
RBAM_004320__    200 TTTCAGAAC-----CTGCGGTTATTGCCGTCACGGGAGCTGATTTCGCCC    244

BSNT_00716___    245 TGCGTATTAATGACGAGGAAGCGCCTTTATGGAAGCCTGTGCTCATTAAG    294
                     |.|.||||||||..|||...||.|||.|||||||.||.||..|.||.|||
RBAM_004320__    245 TTCATATTAATGGGGAGCCCGCCCCTCTATGGAAACCGGTTTTGATAAAG    294

BSNT_00716___    295 GAAAACAGCACAGTCAGCTTTGGCCCCTGCAAACTCGGCAGCCGTGCTTA    344
                     |||||||||...|||...||.||.||.|||||..|.||.|||||.|||||
RBAM_004320__    295 GAAAACAGCGTCGTCTCATTCGGGCCGTGCAAGATGGGGAGCCGCGCTTA    344

BSNT_00716___    345 TTTGGCGGCAGCCGGCGGCATCGAGGTGCCTGCCGTCATGGATAGTAAAA    394
                     |.|.||.|..||.||.||..|.||.|||||.|||||||||||.||.||||
RBAM_004320__    345 TCTCGCAGTCGCGGGTGGATTTGACGTGCCCGCCGTCATGGAAAGCAAAA    394

BSNT_00716___    395 GCACATACGTCAGAGGAAGCATCGGCGGACTTCATGGCAGAGCGCTTCAA    444
                     ||||.||.|||||||...|.||||||||..||...||.||||||||.|||
RBAM_004320__    395 GCACGTATGTCAGAGCGGGGATCGGCGGTTTTTGCGGAAGAGCGCTGCAA    444

BSNT_00716___    445 AAAGAAGATGAACTGAACATTGGAGAGATGTCAGCTC-------------    481
                     |||||.|||||.|||                |.||||             
RBAM_004320__    445 AAAGATGATGAGCTG----------------CCGCTCGGCCGTATGACGC    478

BSNT_00716___    482 ---TTTCGCAAACCATC-----CTTTCCCGCTTAAGTTCGCTGCTT--GG    521
                        .||||.||.|.|||     ||.||     |.||  ||.|.|||  ||
RBAM_004320__    479 CATGTTCGGAATCAATCGCGTACTGTC-----TGAG--CGATTCTTTCGG    521

BSNT_00716___    522 AAAACAGGGATTTGCAGCACCGAAGTGGTCAGTCAGCCGCGGCAGATTTC    571
                     |.|.||.||.||..||||.||..|.|||||.||||||.||.|..||||||
RBAM_004320__    522 ACAGCATGGTTTCTCAGCGCCTGATTGGTCTGTCAGCAGCAGAGGATTTC    571

BSNT_00716___    572 TGCCATTGAAGAAGAATCCCGTTATTCGGGTGCTGGAAGGAAAGCAATT-    620
                     ||||..||||.||.|||||.||.||.||.|||||.|||||....||||| 
RBAM_004320__    572 TGCCGCTGAAAAAAAATCCGGTCATACGAGTGCTTGAAGGCGCTCAATTT    621

BSNT_00716___    621 --TGCCTTTTTCACAGAAGAATCAAAAACGCGTTTTTATGAAGAAGCAT-    667
                       |||   |||.|||||||||.|||||...||||||||..||||..||| 
RBAM_004320__    622 CATGC---TTTTACAGAAGAAGCAAAATTACGTTTTTACCAAGAGTCATA    668

BSNT_00716___    668 TTCGTGTCACGCCGCAGTCCGACCGTATGGGCTACAGGCTCAAAGGAGAA    717
                     |.|| ||||||||.||.||||||||.|||||||||.||||.||.||.|..
RBAM_004320__    669 TACG-GTCACGCCTCAATCCGACCGAATGGGCTACCGGCTGAAGGGCGCT    717

BSNT_00716___    718 CCGCTCGAACTGAAGGCCCCGCTTGAGATGGTGTCGGAAGCGGTTTCATT    767
                     |||||.|||.||..||..|||||.||||||||.||.||.||.||..|.||
RBAM_004320__    718 CCGCTTGAATTGCGGGAGCCGCTGGAGATGGTATCTGAGGCCGTGACGTT    767

BSNT_00716___    768 CGGAACAGTTCAGGTGCCGCCTGACGGCAACCCGATTATCCTGCTTGCAG    817
                     ||||||.||.|||||||||||.||||||||.||||||||.|||||.||.|
RBAM_004320__    768 CGGAACGGTGCAGGTGCCGCCGGACGGCAATCCGATTATTCTGCTGGCTG    817

BSNT_00716___    818 ACCGGCAGACGACTGGCGGCTATCCGAGGATCGCGCACATCATATCCGCT    867
                     ||.|.||||||||.||.|||||||||.||||.|||||.|||||||||||.
RBAM_004320__    818 ACAGACAGACGACGGGGGGCTATCCGCGGATGGCGCATATCATATCCGCC    867

BSNT_00716___    868 GATCTTCCGATTGTTTCCCAAATCATGCCGGGCG-----AGCACGTTCAG    912
                     ||||||||..|.||..||||||..||||||||.|     |.|||||||.|
RBAM_004320__    868 GATCTTCCTCTCGTCGCCCAAACGATGCCGGGGGAACATATCACGTTCCG    917

BSNT_00716___    913 TTTGAGCCTGTGTCCCTCCAGGAGGCAGAA--GC-GCTTGCGGTAGAACG    959
                          |.|.||.||.||..||||.||.|||  || ||||   .||||...
RBAM_004320__    918 -----GGCCGTTTCGCTGGAGGAAGCGGAACTGCTGCTT---TTAGAGAA    959

BSNT_00716___    960 GGAACAGCATATAAAAGAACTGAAAACGAGAATGAAGATGGAATGGCTGA   1009
                     |||||||||..||||.||.||||||.|.||..|.||.|||||||||||||
RBAM_004320__    960 GGAACAGCAGCTAAAGGAGCTGAAAGCAAGGCTTAAAATGGAATGGCTGA   1009

BSNT_00716___   1010 CATAG-   1014
                     ..| | 
RBAM_004320__   1010 TCT-GA   1014


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