Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00786 and RBAM_004920
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:34
# Commandline: needle
# -asequence dna-align/BSNT_00786___ydbR.1.9828.seq
# -bsequence dna-align/RBAM_004920___ydbR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00786___ydbR-RBAM_004920___ydbR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00786___ydbR-RBAM_004920___ydbR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00786___ydbR
# 2: RBAM_004920___ydbR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1536
# Identity: 1333/1536 (86.8%)
# Similarity: 1333/1536 (86.8%)
# Gaps: 51/1536 ( 3.3%)
# Score: 6057.0
#
#
#=======================================
BSNT_00786___ 0 -------------------------------------------------- 0
RBAM_004920__ 1 GTGGTAAATCACGACATTACTGAAACAGCAATCAGAAGGAGTTTGAATAA 50
BSNT_00786___ 1 -TTGACTATAACGTTTCAAGATTTTAATTTAAGTTCTGATCTCATGAAAG 49
|||||||||||||||||||||||..|.|||||||||||||||||||||.
RBAM_004920__ 51 TTTGACTATAACGTTTCAAGATTTCCAATTAAGTTCTGATCTCATGAAAT 100
BSNT_00786___ 50 CAATTAATCGTATGGGATTTGAAGAAGCAACACCGATTCAGGCACAAACG 99
||||.||||||||||||||||||||||||||||||||.||||||||||||
RBAM_004920__ 101 CAATCAATCGTATGGGATTTGAAGAAGCAACACCGATCCAGGCACAAACG 150
BSNT_00786___ 100 ATACCGCTCGGACTTTCAAATAAAGACGTCATTGGACAAGCGCAAACAGG 149
||.|||||||||||||.|||||||||.|||||.|||||||||||||||||
RBAM_004920__ 151 ATTCCGCTCGGACTTTTAAATAAAGATGTCATCGGACAAGCGCAAACAGG 200
BSNT_00786___ 150 TACAGGTAAAACAGCTGCGTTTGGTATACCCCTTGTTGAAAAAATTAACC 199
|||||||||||||||||||||.|||||||||||||||||||||||.||||
RBAM_004920__ 201 TACAGGTAAAACAGCTGCGTTCGGTATACCCCTTGTTGAAAAAATGAACC 250
BSNT_00786___ 200 CCGAGTCTCCTAATATTCAAGCAATCGTAATCGCGCCAACCCGTGAATTA 249
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_004920__ 251 CCGAGTCTCCTAATATTCAAGCAATCGTAATCGCGCCAACCCGTGAATTA 300
BSNT_00786___ 250 GCCATTCAAGTATCTGAAGAATTGTATAAAATCGGACAAGATAAACGTGC 299
||||||||||||||||||||.||.||||||||||||||||||||.|||||
RBAM_004920__ 301 GCCATTCAAGTATCTGAAGAGTTATATAAAATCGGACAAGATAAGCGTGC 350
BSNT_00786___ 300 GAAGGTTCTTCCTATTTACGGCGGACAGGATATTGGACGGCAAATCCGGG 349
|||.||.||.||||||||||||||.||||||||.|||||.||.|||||.|
RBAM_004920__ 351 GAAAGTACTGCCTATTTACGGCGGCCAGGATATCGGACGTCAGATCCGCG 400
BSNT_00786___ 350 CGTTAAAGAAGAATCCGAATATTATTGTCGGAACACCTGGACGTCTTCTT 399
|.||.|||||.||.|||.||||.||.||.||.||.||.||.|||||||||
RBAM_004920__ 401 CATTGAAGAAAAACCCGCATATCATCGTAGGTACGCCGGGGCGTCTTCTT 450
BSNT_00786___ 400 GACCACATCAATCGCCGCACCATTCGTTTAAACAATGTAAATACTGTTGT 449
|||||.|||||.||||||||.||.|||||||||||.||.|||||.|||||
RBAM_004920__ 451 GACCATATCAACCGCCGCACGATCCGTTTAAACAACGTGAATACGGTTGT 500
BSNT_00786___ 450 AATGGATGAAGCGGATGAAATGCTGAACATGGGATTCATTGATGATATTG 499
.||||||||.||.||||||||||||||.|||||||||||||||||.||||
RBAM_004920__ 501 CATGGATGAGGCTGATGAAATGCTGAATATGGGATTCATTGATGACATTG 550
BSNT_00786___ 500 AATCTATCCTTTCAAACGTGCCAAGCGAGCATCAGACACTTCTGTTCTCT 549
||||.||.||.|||||||||||.|||||.||.||.||.||..|.|||||.
RBAM_004920__ 551 AATCCATTCTCTCAAACGTGCCGAGCGACCACCAAACGCTCTTATTCTCA 600
BSNT_00786___ 550 GCCACAATGCCTGCGCCGATCAAACGCATTGCAGAGCGCTTTATGACTGA 599
||.|||||||||||||||||||||||.||.||||||||.||.||||||||
RBAM_004920__ 601 GCAACAATGCCTGCGCCGATCAAACGGATCGCAGAGCGTTTCATGACTGA 650
BSNT_00786___ 600 GCCGGAACACGTAAAAGTAAAAGCGAAAGAAATGACGGTTTCTAACATTC 649
||||||||||||||||||||||||||||||||||||.||.||.|||||||
RBAM_004920__ 651 GCCGGAACACGTAAAAGTAAAAGCGAAAGAAATGACTGTGTCCAACATTC 700
BSNT_00786___ 650 AGCAGTTCTATTTGGAAGTGCAAGAACGCAAAAAATTCGATACACTGACT 699
||||||||||.|||||||||||.||.|||||||||||||||||.||||||
RBAM_004920__ 701 AGCAGTTCTACTTGGAAGTGCAGGAGCGCAAAAAATTCGATACGCTGACT 750
BSNT_00786___ 700 CGTCTTCTTGACATTCAGTCTCCTGAGCTTGCGATCGTATTCGGACGTAC 749
|||||||||||||||||||||||.||.|||||||||||||||||||||||
RBAM_004920__ 751 CGTCTTCTTGACATTCAGTCTCCGGAACTTGCGATCGTATTCGGACGTAC 800
BSNT_00786___ 750 AAAACGCCGTGTCGATGAACTGGCTGAAGCCCTGAACCTTCGCGGATATG 799
.|||||||||||||||||.||.||||||||||||||||||||||||||||
RBAM_004920__ 801 GAAACGCCGTGTCGATGAGCTTGCTGAAGCCCTGAACCTTCGCGGATATG 850
BSNT_00786___ 800 CAGCTGAAGGAATTCACGGTGACTTAACGCAGGCGAAACGTATGGTTGCG 849
|.|||||||||||||||||.||||||||||||||||||||||||||||||
RBAM_004920__ 851 CGGCTGAAGGAATTCACGGCGACTTAACGCAGGCGAAACGTATGGTTGCG 900
BSNT_00786___ 850 CTTCGTAAATTTAAAGAAGGCGCAATCGAAGTTCTTGTCGCAACTGATGT 899
||||||||||||||||||||.||.||||||||.|||||.||.|||||.||
RBAM_004920__ 901 CTTCGTAAATTTAAAGAAGGTGCGATCGAAGTGCTTGTAGCGACTGACGT 950
BSNT_00786___ 900 TGCCGCTCGCGGACTTGATATCTCAGGTGTTACACACGTATACAACTTCG 949
||||||.||||||||||||||||||||.|||||.|||||.||||||||.|
RBAM_004920__ 951 TGCCGCCCGCGGACTTGATATCTCAGGCGTTACCCACGTTTACAACTTTG 1000
BSNT_00786___ 950 ACGTGCCTCAAGATCCTGAAAGCTACGTTCACCGTATCGGAAGAACGGGC 999
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_004920__ 1001 ACGTGCCTCAAGATCCTGAAAGCTACGTTCACCGTATCGGAAGAACGGGC 1050
BSNT_00786___ 1000 CGTGCAGGAAAAACAGGTATGGCGATGACGTTCATTACACCGCGTGAGAA 1049
||||||||||||||.|||||||||||||||||.||.||||||||||||||
RBAM_004920__ 1051 CGTGCAGGAAAAACGGGTATGGCGATGACGTTTATCACACCGCGTGAGAA 1100
BSNT_00786___ 1050 AAGCATGCTTCGCGCAATTGAACAAACAACAAAACGCAAAATGGACCGCA 1099
|||||||||||||||.|||||||||||.||||||||||||||||||||.|
RBAM_004920__ 1101 AAGCATGCTTCGCGCGATTGAACAAACGACAAAACGCAAAATGGACCGTA 1150
BSNT_00786___ 1100 TGAAGGAGCCTACACTTGATGAAGCGTTAGAAGGCCAGCAACAGGTTACT 1149
||||.|||||.||.|||||.|||||.||||||||.|||||.|||||.||.
RBAM_004920__ 1151 TGAAAGAGCCGACGCTTGACGAAGCATTAGAAGGACAGCAGCAGGTGACG 1200
BSNT_00786___ 1150 GTTGAACGTCTTCGCACAACAATCAGTGAAAACAACCTGAACTTCTACAT 1199
|||||.|||||.|||||..|.|||||.|||||||||||||||||||||||
RBAM_004920__ 1201 GTTGACCGTCTGCGCACGGCGATCAGCGAAAACAACCTGAACTTCTACAT 1250
BSNT_00786___ 1200 GACAGCGGCAGCTGAGCTGCTTGAAGATCATGATGCAGTAACAGTGGTTG 1249
|||.||.||.||.||..||.|.|||||||||||||||||.|||||.||.|
RBAM_004920__ 1251 GACGGCAGCTGCGGAATTGTTAGAAGATCATGATGCAGTGACAGTTGTGG 1300
BSNT_00786___ 1250 CGGCGGCTATCAAAATGGCTACTAAAGAGCCAGACGACACACCGGTTCGC 1299
|.||.||.||.||||||||.||.||||||||.|||..|||.||.||.|||
RBAM_004920__ 1301 CTGCAGCCATTAAAATGGCGACAAAAGAGCCGGACAGCACGCCTGTACGC 1350
BSNT_00786___ 1300 TTAACAGACGAAGCGCCGATGGTCAGCAAACGCTACAAGAACCAGCGCTC 1349
.|.||.||.||||||||||||||||||||||||||.||.||||||||..|
RBAM_004920__ 1351 CTCACTGATGAAGCGCCGATGGTCAGCAAACGCTATAAAAACCAGCGTAC 1400
BSNT_00786___ 1350 TTCTAAACGCAGAGACGGTCAAGGCGGCGGCTACCGCGGCGGAAAAGGGA 1399
||||||.|||||||||||.|||||||||||||||||||||||.|||||||
RBAM_004920__ 1401 TTCTAAGCGCAGAGACGGCCAAGGCGGCGGCTACCGCGGCGGCAAAGGGA 1450
BSNT_00786___ 1400 AAAGCAACAACCGTTCTTCCTATGACAAAAAGCGTTCAAACGATCGCCGT 1449
|||.||||||||||||||||||.||.|||||.||.||||.|||.||||||
RBAM_004920__ 1451 AAACCAACAACCGTTCTTCCTACGATAAAAAACGCTCAAGCGACCGCCGT 1500
BSNT_00786___ 1450 TCTTCAGGTGACAGACGCCAGAAAAAATCTTACTAA 1485
|||||||||||||||||||||||||||||.||||||
RBAM_004920__ 1501 TCTTCAGGTGACAGACGCCAGAAAAAATCATACTAA 1536
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