Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00786 and RBAM_004920
See
DNA alignment /
Visit
BSNT_00786 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:34
# Commandline: needle
# -asequence pep-align/BSNT_00786___ydbR.1.9828.seq
# -bsequence pep-align/RBAM_004920___ydbR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00786___ydbR-RBAM_004920___ydbR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00786___ydbR-RBAM_004920___ydbR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00786___ydbR
# 2: RBAM_004920___ydbR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 511
# Identity: 481/511 (94.1%)
# Similarity: 490/511 (95.9%)
# Gaps: 17/511 ( 3.3%)
# Score: 2433.0
#
#
#=======================================
BSNT_00786___ 1 -----------------MTITFQDFNLSSDLMKAINRMGFEEATPIQAQT 33
:|||||||.|||||||:||||||||||||||||
RBAM_004920__ 1 MVNHDITETAIRRSLNNLTITFQDFQLSSDLMKSINRMGFEEATPIQAQT 50
BSNT_00786___ 34 IPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTREL 83
|||||.|||||||||||||||||||||||||:||||||||||||||||||
RBAM_004920__ 51 IPLGLLNKDVIGQAQTGTGKTAAFGIPLVEKMNPESPNIQAIVIAPTREL 100
BSNT_00786___ 84 AIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRLL 133
|||||||||||||||||||||||||||||||||||||||:||||||||||
RBAM_004920__ 101 AIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLL 150
BSNT_00786___ 134 DHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFS 183
||||||||||||||||||||||||||||||||||||||||||:|||||||
RBAM_004920__ 151 DHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSDHQTLLFS 200
BSNT_00786___ 184 ATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLT 233
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_004920__ 201 ATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLT 250
BSNT_00786___ 234 RLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVA 283
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_004920__ 251 RLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVA 300
BSNT_00786___ 284 LRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_004920__ 301 LRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 350
BSNT_00786___ 334 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVT 383
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_004920__ 351 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVT 400
BSNT_00786___ 384 VERLRTTISENNLNFYMTAAAELLEDHDAVTVVAAAIKMATKEPDDTPVR 433
|:||||.||||||||||||||||||||||||||||||||||||||.||||
RBAM_004920__ 401 VDRLRTAISENNLNFYMTAAAELLEDHDAVTVVAAAIKMATKEPDSTPVR 450
BSNT_00786___ 434 LTDEAPMVSKRYKNQRSSKRRDGQGGGYRGGKGKSNNRSSYDKKRSNDRR 483
||||||||||||||||:|||||||||||||||||:|||||||||||:|||
RBAM_004920__ 451 LTDEAPMVSKRYKNQRTSKRRDGQGGGYRGGKGKTNNRSSYDKKRSSDRR 500
BSNT_00786___ 484 SSGDRRQKKSY 494
|||||||||||
RBAM_004920__ 501 SSGDRRQKKSY 511
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.