Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00801 and RBAM_005040

See Amino acid alignment / Visit BSNT_00801 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:35
# Commandline: needle
#    -asequence dna-align/BSNT_00801___rsbU.1.9828.seq
#    -bsequence dna-align/RBAM_005040___rsbU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00801___rsbU-RBAM_005040___rsbU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00801___rsbU-RBAM_005040___rsbU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00801___rsbU
# 2: RBAM_005040___rsbU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1013
# Identity:     823/1013 (81.2%)
# Similarity:   823/1013 (81.2%)
# Gaps:          10/1013 ( 1.0%)
# Score: 3361.5
# 
#
#=======================================

BSNT_00801___      1 GTGGATTTTAGGGAGGTTATTGAGCAGCGGTATCATCAGCTGCTTAGCCG     50
                     ||||||||.|||||||||||.|||||||||||||||||||||||||||||
RBAM_005040__      1 GTGGATTTCAGGGAGGTTATAGAGCAGCGGTATCATCAGCTGCTTAGCCG     50

BSNT_00801___     51 ATATATAGCCGAATTAACAGAAACATCTTTATATCAAGCCCAAAAATTCA    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_005040__     51 ATATATAGCCGAATTAACAGAAACATCTTTATATCAAGCCCAAAAATTCA    100

BSNT_00801___    101 GCCGAAAAACAATCGAGCACCAAATTCCTCCGGAAGAAATCATCAGCATT    150
                     ||||||||||.||.||.||.||..||||||||||.||.||.|||||.||.
RBAM_005040__    101 GCCGAAAAACGATTGAACATCAGGTTCCTCCGGAGGAGATTATCAGTATC    150

BSNT_00801___    151 CACAGAAAAGTGCTGAAGGAGCTGTATCCAAGTCTCCCGGAAGATGTGTT    200
                     |||.|||||||..|.|||||.||||||||...|||.|||||||||||.||
RBAM_005040__    151 CACCGAAAAGTAGTAAAGGAACTGTATCCGGATCTGCCGGAAGATGTTTT    200

BSNT_00801___    201 TCATTCGCTGGATTTTTTAATAGAAGTCATGATTGGTTATGGAATGGCTT    250
                     ||||||||||||||||||||||||||||||||||||.||.||.|||||||
RBAM_005040__    201 TCATTCGCTGGATTTTTTAATAGAAGTCATGATTGGCTACGGGATGGCTT    250

BSNT_00801___    251 ATCAGGAGCATCAAACCCTTAGAGGGATACAGCAGGAAATCAAATCAGAA    300
                     |||||||.|||||||..||.||||..||.||||||||..|....||||||
RBAM_005040__    251 ATCAGGAACATCAAAGTCTGAGAGATATCCAGCAGGAGCTTCGTTCAGAA    300

BSNT_00801___    301 ATTGAAATCGCGGCAAATGTCCAGCAGACGCTGCTCGGAACTAAAGTTCC    350
                     ||||||||.||.||||||||.||||||||||||||.||.||.|||.||||
RBAM_005040__    301 ATTGAAATTGCCGCAAATGTTCAGCAGACGCTGCTTGGCACAAAAATTCC    350

BSNT_00801___    351 TCAGGAGGAAGCGCTGGATATCGGCGCCATCAGTGTTCCCGCTAAACAGA    400
                     |.|.||.||||..|||||||||||.||.|||||.||.|||||.|||||||
RBAM_005040__    351 TGAAGAAGAAGATCTGGATATCGGGGCGATCAGCGTCCCCGCCAAACAGA    400

BSNT_00801___    401 TGAGCGGTGATTACTACCACTTTGTCAAAGACAAGGAATCCATCAATATT    450
                     |||||||.|||||.||.|||||||||||||||||||||||.||.||.||.
RBAM_005040__    401 TGAGCGGGGATTATTATCACTTTGTCAAAGACAAGGAATCGATTAACATC    450

BSNT_00801___    451 GCAATCGCGGACGTGATCGGAAAAGGCATTCCAGCGGCTTTATGCATGTC    500
                     ||.||.||.||.||.|||||||||||.||.||.||.||.||.||||||||
RBAM_005040__    451 GCGATAGCCGATGTCATCGGAAAAGGAATACCCGCCGCATTGTGCATGTC    500

BSNT_00801___    501 CATGATTAAATACGCGATGGACTCTTTGCCAGAAACGGGCATACACCCTT    550
                     .|||||.||.||.||.|||||||||.|.||.||.|..|||||.|||||.|
RBAM_005040__    501 GATGATCAAGTATGCCATGGACTCTCTTCCGGAGATCGGCATTCACCCCT    550

BSNT_00801___    551 CTCAAGTGCTGAAAAATTTGAATCGTGTTGTTGAACAAAACGTTGATGCC    600
                     |.|||||||||||||||.|.||.||.|||||.|||||.|||||.||..|.
RBAM_005040__    551 CCCAAGTGCTGAAAAATCTTAACCGCGTTGTAGAACAGAACGTGGACTCA    600

BSNT_00801___    601 AGTATGTTTATTACGATGTTTTATGCGAATTACAATATGGACAATCATCA    650
                     ||.||||||||.||.||||||||.||.||.|||||||.|.|.|||||.||
RBAM_005040__    601 AGCATGTTTATCACCATGTTTTACGCAAACTACAATACGAAAAATCACCA    650

BSNT_00801___    651 ATTTACATATGCTTCAGCGGGACATGAACCGGGATTCTATTATTCTCAAA    700
                     ||||||||||||.||.|||||.|||||.|||||.|||||.||.|||.|||
RBAM_005040__    651 ATTTACATATGCCTCTGCGGGGCATGAGCCGGGCTTCTACTACTCTGAAA    700

BSNT_00801___    701 AGGACAACACGTTTTACGATTTAGAGGCCAAAGGACTCGTTCTCGGCATC    750
                     |.||.||.|.||||||.|||.|.|||||.||||||.|.||.||.||.||.
RBAM_005040__    701 AAGAAAAAAAGTTTTATGATCTGGAGGCAAAAGGATTGGTGCTGGGAATT    750

BSNT_00801___    751 TCGCAGGACTATGACTACAAACAATTCGATCAGCATCTGGAAAAGGGCGA    800
                     ||.|||||.|.|||.||||..||||..||.|||||..||||..|.||.||
RBAM_005040__    751 TCTCAGGATTTTGATTACAGCCAATATGAACAGCACATGGACGAAGGAGA    800

BSNT_00801___    801 TATGATTGTTTTATTTTCTGATGGCGTCACAGAATGCAGAACGGAAAACG    850
                     .|||||.|||.|.||||||||.||||||||.||||||.|.||.|||||||
RBAM_005040__    801 CATGATCGTTCTTTTTTCTGACGGCGTCACCGAATGCCGTACCGAAAACG    850

BSNT_00801___    851 GTTTCTT-----GGAGCGTCCTGATCTGCAGAAGCTCATTGAGGAACATA    895
                     |||||||     |.||||.|.|  ||.||..|.||   |.||.|||||||
RBAM_005040__    851 GTTTCTTAGAACGCAGCGACAT--TCAGCGCATGC---TGGAAGAACATA    895

BSNT_00801___    896 TGTGTTCCTCCGCGCAGGAAATGGTCAAAAACATTTATGACAGCCTCCTC    945
                     ||...|.||||||||||||.|||||||||||||||||.||||||||.||.
RBAM_005040__    896 TGGACTGCTCCGCGCAGGATATGGTCAAAAACATTTACGACAGCCTGCTG    945

BSNT_00801___    946 AAATTGCAGGATTTTCAGCTTCACGATGATTTTACGTTAATTGTTTTGCG    995
                     |.|.|.|||||.|||||||||||.||.|||||||||||||||||||||..
RBAM_005040__    946 AGACTCCAGGACTTTCAGCTTCATGACGATTTTACGTTAATTGTTTTGAA    995

BSNT_00801___    996 GAGAAAGGTTTAA   1008
                     .||||||||||||
RBAM_005040__    996 AAGAAAGGTTTAA   1008


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